EBI-Metagenomics EukCC issues

EBI-Metagenomics / EukCC

Tool to estimate genome quality of microbial eukaryotes

GNU General Public License v3.0

29 stars 9 forks source link

issues

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Merge bins from different binning tools

#44 timghaly opened 5 months ago
0
Folder mode missed results for some bins

#43 zhenjiaofenjie opened 9 months ago
0
Clarifications for EukCC outputs and contamination identification

#42 Edouard94 opened 10 months ago
0
Support of compressed bin.fa

#41 KateSakharova opened 10 months ago
0
metaeuk fails

#40 metalichen opened 1 year ago
4
How to use conda install eukcc

#39 weiguanyue opened 1 year ago
2
Unable to download EukCC database

#38 akbyers opened 1 year ago
0
binlinks.py , IndexError: list index out of range

#37 haihao999 opened 1 year ago
1
Could EukCC run offline？

#36 ChenTianYi99 opened 1 year ago
0
FileNotFoundError: Could not find fasta file

#35 alienn233 opened 1 year ago
1
Add NCBI TaxID to the eukcc.csv file?

#34 mkellom opened 2 years ago
0
Provide more information in results regarding bin merging

#33 mgabriell1 opened 2 years ago
1
'NoneType' object has no attribute 'query_alignment_length' when using merged bam file

#32 mgabriell1 opened 2 years ago
18
ValueError: 13349 taxid not found

#31 mkellom closed 2 years ago
3
Suggested edits for version 2 (Adding ete3 db, updating metaeuk, custom protein files)

#30 jolespin opened 2 years ago
6
[Feature Request] Must add option to provide path to ETE3 database OR provide in EukCC db

#29 jolespin opened 2 years ago
3
Example workflow?

#28 jolespin opened 2 years ago
0
Bin merging with PacBio reads?

#27 mkellom opened 2 years ago
4
Bin merging example set

#26 mkellom opened 2 years ago
4
Unlisted and outdated dependency

#25 smurdock-UVic opened 2 years ago
3
Eukcc does not work properly after installation

#24 389419784 closed 2 years ago
3
Failed to successfully run test

#23 robinblonk closed 3 years ago
8
merge options

#22 Lcornet closed 3 years ago
1
Further guidance on GeneMark-ES installation

#21 mw55309 closed 3 years ago
3
GeneMark-ES license

#20 Lcornet opened 3 years ago
1
max_silent_contamination ?

#19 michoug closed 3 years ago
1
No profiles to evaluate?

#18 franciscozorrilla closed 3 years ago
1
Question: multicellular eukaryotes?

#17 Ahmed-Shibl closed 3 years ago
2
Eukcc Failure

#16 u15412611 closed 3 years ago
2
Ability to choose which node to use for completeness estimation

#15 jamiemcg closed 3 years ago
4
stop codon (*) causes failure

#14 halexand opened 3 years ago
1
IndexError: list index out of range

#13 gchevignon closed 2 years ago
3
Exit code when no marker gene was found

#12 openpaul opened 3 years ago
1
error script workflow.py: index out of range

#11 Otavio20 closed 3 years ago
2
Failure placementReduced.jplace has no placements

#10 sarah872 closed 3 years ago
5
Error taxid not found

#9 sarah872 closed 3 years ago
2
FileNotFoundError: [Errno 2] No such file or directory: 'hmmsearch'

#8 openpaul closed 3 years ago
4
empty/missing file eukcc.tsv

#7 BiodivGenomic opened 3 years ago
1
Missing bed entry error in protein mode

#6 halexand opened 4 years ago
3
pip vs pip3 in docs

#5 hyphaltip closed 4 years ago
1
git folder checkout is case sensitive

#4 hyphaltip closed 4 years ago
0
Issues when running eukcc in test genome

#3 leosouliotis closed 4 years ago
16
eukccdb

#2 housw closed 4 years ago
2
Install issue

#1 claudiodonati closed 4 years ago
1