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Hello,
I am trying to analyze the humann output files to obtain the differentially abundant pathways in each group using aldex2_kw.
however I got this error
Error in aldex.clr.function(reads, con…
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Hi,
I ran q2-dbbact using qiime2-2021.4 and got the following error
Plugin error from dbbact: Duplicate observation IDs
The content of the log file is following
trimming primers if needed
…
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Hi @benjjneb and community,
I'm running through the [standard DADA2 pipeline](https://benjjneb.github.io/dada2/tutorial.html) but lose >50% of my reads at the merging step. The sequencing setup was…
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Hi Author(s),
I think it is super cool that you've implemented this dynamic strategy!
We where trying to normalize some amplicons on a given chromosome, so we made sequences that where unique to…
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>>
>> https://github.com/rmcolq/pandora/blob/815da22867f2bdaa3e3bf40f382be830c1506b0a/src/estimate_parameters.cpp#L217-L231
>>
>> In particular https://github.com/rmcolq/pandora/blob/815da22867f2…
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Here are the first round reviews from the Diagnostics manuscript as an itemized list and the full text:
- [ ] Reviewer 1.1 --> #1173
- [ ] Reviewer 1.2 (this is a long one, we could split it up)
…
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Hello,
Executed code:
shapemapper --name example --target ../FASTA/RNA.fasta --out RNA_shapemap --amplicon --modified --R1 100mM_1M7_RNA_R1.fastq --R2 100mM_1M7_RNA_R2.fastq --untreated --R1 DM…
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### Contact details
mboto@ciimar.up.pt
### Dataset Title
Natural and Oil-enriched Prokaryotic Communities
### Describe your dataset and any specific challenges or blockers you have or anticipate.…
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Hi Katherine,
Thank you rebar, it's working very nicely with a in-silico dataset (part of a quality assurance program in Australia).
I am getting some mixed results when I come include or exclu…
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In the PBCCSWholeGenomeSingleFlowcell workflow, in CallSVs, Sniffles task I got an error where it sounds like there's too few reads in the bam to estimate some parameter it needs? Log file excerpt fol…