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Need a justification for why ARG-ANNOT was used.
As the author's point out genomic surveillance of CP genes is important, therefore using a database that has not been updated in two years is a prob…
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Hi, thanks so much for creating this awesome tool, I'm eager to get it working! I've run into a couple of errors that I can't seem to figure out-- thanks in advance for your help!
1) I first ran i…
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Especially for the blaOXA gene family, how do you decide which genes are carbapenemase genes and which are not? Is there a citeable source which you can provide for this?
Ideally this would be a s…
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`Current antimicrobial resistance gene finding tools can detect the genes from either genome assemblies or sequencing reads but do not exclusively report a genetic profile for the presence of CP genes…
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*** ERROR ***
Reading file '/home/danicats/miniconda3/share/amrfinderplus/data/latest/database_format_version.txt'
Cannot open file '/home/danicats/miniconda3/share/amrfinderplus/data/latest/databas…
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**Description**
While working through the tutorial, the following error is generated while trying to download and process a single sample from the SRA:
Species 'Staphylococcus' not available, plea…
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Hello guys, I am trying to run the tutorial to check if the installation was correct (and while I am waiting for the real data to run on it).
First, I noticed that if I don´t specify "--outdir" he…
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Rationale: currently characterization of environmental antimicrobial resistance genes is lacking as the potential bacterial pool is too large to sample. Using existing SRA data, if we find a homolog o…
bfjia updated
4 years ago
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I can install bactopia v1.4.9 using conda on OS X, but the `bactopia build --default` command fails with a 'ResolvePackageNotFound' error and a long list of missing packages. I think this is because t…
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Hi, I recently started using Vienna and it works really well, except for YouTube feeds. As you can see the article/video is completely empty. Now I don't expect there to be an video, and I'm totally f…