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Stemming from https://github.com/geneontology/go-ontology/issues/11996
There are 12 terms in GO at the moment with a definition comment saying
“This term represents a deleted EC activity and is sche…
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* **Terms to be merged: Provide GO ID and term label**
polynucleotide adenylyltransferase activity (GO:0004652)
RNA adenylyltransferase activity (GO:1990817)
- polynucleotide adenylyltransferas…
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Dear ChEBI curators,
Could you please check CHEBI:145814 'EC 1.2.1.12 (aspartate-semialdehyde dehydrogenase) inhibitor'.
It seems that the label should read 'EC 1.2.1.11 (aspartate-semialdehyde de…
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I think EC:2.3.1.255 can be added as an xref to peptide alpha-N-acetyltransferase activity (GO:0004596)
id: GO:0004596
name: peptide alpha-N-acetyltransferase activity
namespace: molecular_func…
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@balhoff @hdrabkin
Looks like the EC xref on carboxylic ester hydrolase activity (GO:0052689) recently got changed from EC:3.1.1.- to EC:3.1.1.1 (maybe as part of #21287 ?).
https://enzyme.expa…
sjm41 updated
2 years ago
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There are some new Uniprot records in SwissProt format which biopython fails to parse.
Here's an example of a file which biopython fails to parse (UniProt accession `P00720`):
[P00720.txt](https:/…
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Hello,
I have isoseq data and my final transcripts are full length. Because, we chose the 5' cap linker selection method to make cDNAs. I am trying to improve the gene models and using PASA pipeline.…
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"GDP-D-glucose phosphorylase activity" (GO:0080048) is currently classified in the GO as a subtype of hexosyl transferase (GO:0016758, EC:2.4.1.-), and is the immediate child of 'phosphorylase activit…
sjm41 updated
2 years ago
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EC:1.11.1 is the grouping ID for 'peroxidases':
https://enzyme.expasy.org/EC/1.11.1.-
Three terms to review in the GO:
id: GO:0019806
name: bromide peroxidase activity
namespace: molecular_…
sjm41 updated
2 years ago
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The [Cellosaurus](https://web.expasy.org/cellosaurus/) OBO file fails to load with 2.9 (but works with 2.7):
```r
library(ontologyIndex)
## This URL works for both 2.7 and 2.9.
ncit split -> …