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Hi,
I am trying to run the following:
#!/bin/bash
#set -euo pipefail
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# Model for calling whole genome sequencing data.
MODEL=gs://deepvariant/models/DeepVariant/0.8.0/DeepVariant-inception_v3-0.8.0+data-wgs_standard
IMAGE_VERSION=0.8.0
DOCKER_IMAGE=gcr.io/deepvarian…
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Attempting to run variant analysis on bam file aligned to GRCh38.p13 using GRCh38.p13 as the reference but receiving the error below from make_examples. Running in Google Cloud with the following scr…
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Hi,
I started runs on about 15 samples with the deep variant sample script (pasted below). I have the same staging folder for all the samples -- will this cause problems, or will thee samples be qu…
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@bdcallen This builds on one aspect of #89. My question is: Are *any* of the matches in `problems` valid? (Note that I ran this code on a local copy of RStudio using `reprex::reprex()` so that I can p…
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I finally went much further and was able to use "manage" utils to start containers and configure them.
SMC console shows all components are 'green' as in your video but app/callcenter/enu shows serve…
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https://www.idigbio.org/portal/collections/d4870b28-39b1-4d64-8e1f-1b8c998a08cf
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Hi There,
I've tried using Batch-Shipyard to run Snakemake as per the approach:
https://github.com/Azure/azure-hpc/blob/master/LifeSciences/SnakemakeBurst/docs/example.md
But some of the rules …
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#### Problem Description
My credentials.yaml seems to be facing issues when trying to run the following shipyard command:
SHIPYARD_CONFIGDIR=config ./shipyard pool add
```json
{
"credential…
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This builds on earlier exploration in #280 (mappings). Mappings will be needed. @vrandezo + @danbri collaboration notes live here now.
Goal: we want to be able to write JSON-LD (or RDFa/Microdata) th…