googlegenomics gcp-deepvariant-runner issues

googlegenomics / gcp-deepvariant-runner

This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.

Apache License 2.0

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issues

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Missing gcsfuse docker

#30 ConorMesser opened 2 months ago
2
Running multiple samples with the same staging folder name

#29 saliksyed closed 5 years ago
1
Prepare release

#28 samanvp closed 5 years ago
0
gcsfuse: command not found

#27 case3526 closed 5 years ago
4
Running Worker Machines Without External IP Address

#26 obsh closed 5 years ago
5
Metrics utilization

#25 samanvp opened 5 years ago
1
Revert "Avoid non-preemptible retries when '--preemptible' (#18)"

#24 samanvp closed 5 years ago
0
Try both common naming convensions for missing BAI file

#23 samanvp closed 5 years ago
0
Deprecate old flags of # of attempts

#22 samanvp opened 5 years ago
0
Move mountpoint wait to a single action (instead of many actions)

#21 samanvp opened 5 years ago
0
move mountpoint wait command to a separate action

#20 samanvp closed 5 years ago
1
Add metrics module to DeepVariant Runner

#19 samanvp opened 5 years ago
0
Avoid non-preemptible retries when '--preemptible'

#18 samanvp closed 5 years ago
0
Fix escaping of '--regions' flag values

#17 samanvp closed 5 years ago
0
Migration to Python3

#16 samanvp closed 5 years ago
0
Remove an unused flag

#15 samanvp closed 5 years ago
0
Starting multiple gcsfuse processes using PAPI action list

#14 samanvp closed 5 years ago
1
Validate --job_name_prefix to make sure it meets GCP label restrictions

#13 samanvp closed 5 years ago
0
Small fix plus a few unit tests

#12 samanvp closed 5 years ago
0
Automatic flags based on size of BAM file

#11 samanvp opened 5 years ago
0
Add a travis integration to build the docker container

#10 kemp-google opened 5 years ago
0
The README file should include some additional links

#9 kemp-google opened 5 years ago
0
The docker image should use a pinned DV release

#8 kemp-google opened 5 years ago
0
Add a shell script to build and test

#7 kemp-google opened 5 years ago
1
Automatic flags based on size of BAM file

#6 samanvp closed 5 years ago
2
Automatic flags based on size of BAM file

#5 samanvp closed 5 years ago
1
Add a shell script to build and test

#4 kemp-google closed 5 years ago
0
Add a shell script to build and test

#3 kemp-google closed 5 years ago
0
The docker image should have a useful default entrypoint

#2 kemp-google opened 5 years ago
0
Add an ENTRYPOINT to the Dockerfile

#1 kemp-google closed 5 years ago
1