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#### Background:
https://github.com/AlexsLemonade/OpenPBTA-analysis/issues/627#issuecomment-754813774:
- This mapping TSV file (created in #897) needs to be used in all relevant plotting module…
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Hi Shixiang,
when I am trying to use the best practice with 1000 bt x n_nmf_run on my WES mutational signature calling, usually I got way more signatures than sigprofiler.
is there any parameters I …
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Hi, thank you for all your effort. This package is wonderful.
I was using SigProfilerMatrixGeneratorFunc to count 96 context mutations and found that the result is different between 'SNV only VCF' …
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Hello,
I am writing to inquire whether it is possible to know where I could potentially find pentanucleotide context mutational signature matrix describing the probabilities of each mutation in pen…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/TomasettiLab/supersigs
Confirm the following by e…
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This is a follow up of https://github.com/cBioPortal/cbioportal/issues/7804. We should use the same color category code as CVR is using.
tasks:
- [x] contact with CVR team to figure out the color …
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**Describe the issue**
When running FilterCallableLoci, I get the following error:
```
$ Rscript $PURECN/FilterCallableLoci.R --genome hg19 --infile callable_fixed.bed --outfile callable_fixed_cds…
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I am new in cancer genomics and just started working with your dNdSCV package. I found it very straightforward and user friendly but I have a question which I am a bit confused and I am bothering you …
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Hi,
I am using SigProfilerExtractor to determine the mutational signatures of a set of 43 WGS samples with polymerase epsilon exonuclease domain mutations. Some of the samples originate from TCGA and…
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Dear @andreadega ,
I really like the package signature.tools.lib because it provides the powerful function SignatureExtraction() to extract mutational signatures. My question is I had a hard time i…