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```
use Bio::DB::Fasta;
test new("dir/to/Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa")
```
and I get the following output
```
------------- EXCEPTION: Bio::Root::Exception -------------
MS…
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* pvactools version: docker image: griffithlab/pvactools (1.3.5)
* Python version:
* Operating System: Host: Ubuntu 18.04
**Describe the bug**
After running prediction of class I and class II th…
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INFO: Annovar reference files of build hg19 were given, using this build for all analysis.
INFO: Begin.
INFO: Proper directory already exists. Continue.
INFO: Proper directory already exists. Conti…
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1) Update citation section of pVACtools. Add: https://doi.org/10.1038/s41588-018-0283-9
2) Include hyperlink of citation to the "Table of Contents" panel on the main page
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* pvactools version:1.1.0
* Python version:2.7
* Operating System:linux
**Describe the bug**
Traceback (most recent call last):
File "/opt/conda/bin/pvacseq", line 11, in
sys.exit(main(…
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@TotalMiss commented on [Fri Jul 06 2018](https://github.com/griffithlab/pVAC-Seq/issues/344)
I try to use pVAC-Seq to identify neoantigens. I noticed there is a germline variation next to somatice…
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Can follow something like this: https://medium.com/travis-on-docker/how-to-version-your-docker-images-1d5c577ebf54
(will need to tweak for our use case, which uses some passwords that we can't stor…
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just found that S04380110_Padded_grch37_with_M.bed is not in the reference archive for testing. Not that big of a deal because I will test with another bed file.
Also which .yaml file should I use…
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I got an error message`Incorrect number of QSS fields (2) at 1:3681211, cannot merge.` when I was running the `bcftools merge`:
```
bcftools merge --file-list vcffilelist.txt \
--force-samples …