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Hello,
IIUC, `phigaro` config file is, among other things, used to specify the location of some programs used by the software (`hmmsearch` and `prodigal`) and the location of the pVOG database.
…
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In this 06_Abundance.sh file, there is a file assigned to SAF(SAF=./06_Abundance/PIGC90_cds.fna.saf). Could you please explain where it is from and how it is generated? I only found PIGC90_cds.fna in …
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Hi,
I have a few hundred MAGs that I want to taxonomically check and I realized that the checkm software is run MAG per MAG as are all the other steps. However, the pplacer step in checkm takes quite…
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#### Expected behavior
App should keep on playing tracks even if it's removed from recents. The app when available on notification bar should be useful in every case.
#### Actual behavior
Removing …
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* pharokka version: 1.6.1
* Python version: Python 3.10.8
* Operating System: Ubuntu 22.04.3 LTS
### Description
Dear Developer! Could you clarify please. What does this error mean?
```
2024…
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Hi, @pianpianyouche
I installed Plascad as you mentioned in the tutorial with conda environment. However, it will report an error when I ran Plascad with example.fasta or my own plasmids files.
```…
szz65 updated
2 years ago
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Hi, I'm interested in identifying iron related genes within a metatranscriptomics dataset. I have attempted providing a fasta with gene (nucleotide) or protein sequences as bellow, but I hit an error …
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I'm running `CAT v5.2.3 (10 February, 2021)` and am trying to create a custom database for CAT. I have all the needed input files, and I'm running:
```
CAT prepare \
--db_fasta path/to/fasta \
--n…
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Dear Aaron Weimann,
Thank you for developing Traitar. I got an error message when I ran the software. The data used is the data in the test file you provided.
command： traitar phenotype test samp…
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Thank you for developing Traitar. I got an error message when I ran the software. The data used is the data in the test file you provided.
command： traitar phenotype test samples.txt from_genes outp…