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Hi there,
I previously obtained clusters from the cellranger count outputs. Now, I want to perform RNA Velocity to see the differentiation relationship among these clusters using the loom files ge…
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## How to add tutorials
* Fork this repo and make a PR adding a folder here: https://github.com/scverse/scverse-tutorials/tree/main/tutorial-registry/tutorials.
- The folder must contain a `met…
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Hello dev team!
Thank you so much for developing such an amazing tool!
I'm trying to run unitvelo and got an error about "highly_variable". I checked the adata.var and there are highly variable ge…
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when I used this command for the RNA velocity estimation:
cd.velocity(cell_type_u_s_test, permutation_ratio=0.125, n_jobs=8)
then, got the error
ValueError: Input contains NaN, infinity or a valu…
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Hi @mojaveazure - Thank you very much for the suggestion in issue #3423 (considering the spliced assay in the loom object as "RNA assay" and rerun the Seurat SCTransform workflow on this loom object (…
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```pytb
ValueError Traceback (most recent call last)
Input In [185], in ()
1 from cellrank.tl.kernels import CytoTRACEKernel
----> 3 ctk = CytoTRACEKernel(bdat…
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Hello scVelo and @WeilerP,
When I load the 10X raw matrix and paste unspliced and spliced information into it, `scv.pp.filter_and_normalize()` cannot log-transform the `X`. Please see the below cod…
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Hi there,
I have 2 fully clustered Seurat objects. Each comes from a different tissue. I do not want to integrate them because I want to use `RNA Velocity` analysis to see the potential differenti…
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Hi,
Converting Seurat or SingleCellExperiment obj to loom or Ann to import in Python environment has been excruciatingly painful. I'd really appreciate if you could port scvelo to R much like Vel…
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Dear Dr. Qiu:
Dynamo is so excellent and helps me a lot. Thank you very much for providing such a powerful tool.
When i run dyn.pd.perturbation, i am meeting an error. I really don’t know what …