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GuangyuWangLab2021
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cellDancer
Predict RNA velocity through deep learning
https://guangyuwanglab2021.github.io/cellDancer_website/
BSD 3-Clause "New" or "Revised" License
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Torch error
#32
christophechu
opened
3 weeks ago
1
Downstream analysis using CellRank?
#31
christophechu
opened
3 weeks ago
0
Best Practice for Analyzing Multiple Single-cell Sequencing Samples with CellDancer
#30
weir12
opened
4 months ago
1
pseudo_time() error: MAX_ALLOWED_TERM_CELLS=MAX_ALLOWED_TERM_CELLS
#29
Thapeachydude
opened
5 months ago
0
cellDancer does not use GPU
#28
AlexanderAivazidis
opened
5 months ago
1
error of cd.pseudo_time()
#27
datou99
opened
6 months ago
2
Do we have a function to compute RNA velocity for cell by gene matrix?
#26
HelloWorldLTY
opened
6 months ago
1
How to select gene list
#25
mabaoweireadingene
opened
6 months ago
1
Cannot install the package
#24
aqlkzf
opened
6 months ago
1
torch version compatibility
#23
stemjn
opened
6 months ago
1
The plot of RNA velocity has no arrows
#22
zcaiwei
opened
7 months ago
5
The velocity1 and velocity2 values in celldancer_df are NaN
#21
zcaiwei
opened
7 months ago
1
KeyError: 'Mu'
#20
zcaiwei
opened
7 months ago
2
How to identify the transcritption boost genes and branching genes?
#19
xiao00su
opened
7 months ago
1
Obtaining celldancer.pseudo_time() lineage assignment
#18
Jaimelan
closed
5 months ago
4
webiste and cdplt.scatter_gene problems
#17
Jingle0814
opened
8 months ago
1
Save output of adata_to_df_with_embed in environment
#16
rrydbirk
closed
8 months ago
0
None of the genes were predicted.
#15
MSQ-123
opened
11 months ago
3
Computing Cell_velocities projections between CellDancer vs Dynamo
#14
willey2020
closed
10 months ago
3
cd.pseudo_time: IndexError: list index out of range (celldancer 1.1.7, python 3.7.2)
#13
aghr
closed
5 months ago
5
How to export results to scvelo
#12
sup27606
closed
10 months ago
3
Please consider updating cellDancer to the latest python version
#11
sup27606
closed
1 year ago
4
package conflicts
#10
daniel-spies
opened
1 year ago
1
None of the genes were predicted when running celldancer.velocity_estimation.velocity
#9
kousaa
closed
1 year ago
3
how can we know which gene to use?
#8
chen-peng-1874
closed
1 year ago
2
Memory cap?
#7
cnk113
closed
1 year ago
2
Inquiry about model initialization
#6
QiangweiPeng
closed
1 year ago
6
ValueError in RNA velocity estimation
#5
liuxz1213
closed
1 year ago
3
Transfer adata format to dataframe
#4
chen-peng-1874
closed
1 year ago
5
Installing problem
#3
chen-peng-1874
closed
1 year ago
2
function adata_to_df_with_embed
#2
Polligator
closed
1 year ago
2
Violation for pd.DataFrame update
#1
yuntianf
closed
1 year ago
3