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Supposedly the GFF at https://www.ncbi.nlm.nih.gov/genome/?term=txid70779%5bOrganism:noexp
is broken.
When Mox (or GenSas?) is available it would nice to get an annoation going
sr320 updated
4 years ago
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I am using dnaPipeTE to see what transposable elements are present in the genome of the insect species I am studying. I was having an issue with it, I will be really thankful if you can please help me…
dlata updated
4 years ago
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I am working on the detection of transposable elements, utilizing different methods structure-based to obtain different classes of TEs.
I am kindly trying to annotate them using Repeatmasker. Still…
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Hello,
I would like to perform a TEtoolkit analysis on RNA-seq data from _S. cerevisiae_, but could not find any TE annotation file for this organism among those that you provided. Do you have any …
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should they be annotated to tranposition GO:0032196?
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A region in which centric, heterochromatic portions of one or more chromosomes form a compact structure.
I never came across this term in a paper. How does it differ from
pericentric heterochrom…
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I did not find in the manuscript, but would it make sense to use `SalmonTE` to quantify expression of small RNAs? Or is there a reason not to do it?
My use case is unusual, since it would be quant…
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**Submitting author:** @HajkD (Hajk-Georg Drost)
**Repository:** https://github.com/HajkD/LTRpred
**Version:** v1.1.0
**Editor:** @lpantano
**Reviewers:** @dcassol, @mdozmorov
**Archive:** 10.528…
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Since we've implemented [transposition](https://github.com/rism-ch/verovio/issues/1189), another helpful feature would be adding Capo'd versions of chords for guitarists (and other stringed instrument…
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Hello, it's me again !
so, EDTA finished its run on my chicken chr1. However, I ran into a bit of an issue...No non LTR elements were detected by the analysis, even when I used the --sensitive 1 sett…