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oushujun
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EDTA
Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
GNU General Public License v3.0
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.mod.EDTA.TEanno.sum was empty
#471
Jimpann97
opened
13 hours ago
0
Locate source of annotation
#470
fungal-spore
opened
1 week ago
0
Test file failed
#469
xiaoxiao349
opened
1 week ago
0
test data
#468
wwenc
opened
2 weeks ago
5
use command -v instead of which
#467
mikerenfro
opened
3 weeks ago
0
several issues in the ruuning of EDTA2
#466
yanyew
opened
3 weeks ago
0
Using CDS from multiple species
#465
bijendrabio
opened
1 month ago
0
For the RepeatModeler step why throw logs to 2>null?
#464
Isoris
opened
1 month ago
0
panEDTA timing out on large genomes
#463
joannarifkin
opened
1 month ago
2
TE_XXX in gff3 from panEDTA
#462
CongLiu37
opened
1 month ago
0
Unusual Output and Failure During Regular Annotation
#461
sjteresi
opened
1 month ago
0
solve '*.mod.EDTA.TEanno.sum' empty
#460
ZJin2021
opened
1 month ago
3
Statistical genome size
#459
ltswx
opened
1 month ago
0
'调用失败'
#458
Xxi-GitHub
opened
1 month ago
8
ERROR: TE annotation stats results not found in B.purpurea.fasta.mod.EDTA.TE.fa.stat!
#457
Qikiiso
opened
1 month ago
1
LINE and SINE results files has 0 bp!
#456
XuanZhang-Black
opened
2 months ago
0
[No LINE, EDTA 2.2.0] Empty LINE file after RM2
#455
Isoris
opened
2 months ago
0
PanEDTA test output
#454
AnaKurdadze
opened
2 months ago
0
Stuck by BLAST in LTR finding
#453
Yutang-ETH
closed
2 months ago
2
文件缺失
#452
Blosers
opened
2 months ago
1
TIR not found?
#451
CongLiu37
closed
1 month ago
1
I just found that this script in the (../../share/RepeatMasker/) folder will not have this error, maybe can copy the input file, I think it can try?If you tried, can you tell me the result?
#450
chenHuiRu8
opened
2 months ago
3
Hey!Have you solved your problem? I had the same problem.
#449
chenHuiRu8
opened
2 months ago
1
Can't locate SearchResult.pm in @INC (you may need to install the SearchResult module)
#448
chenHuiRu8
closed
3 months ago
3
Would you consider adding -w $genome_file_real_path.EDTA.raw/TIR to line 576 of EDTA_raw.pl
#447
Yutang-ETH
closed
3 months ago
1
dependencies not found in singularity install
#446
molikd
opened
3 months ago
4
ERROR: TE annotation stats results not found in mod.EDTA.TE.fa.stat!
#445
CrayonLinchan
closed
3 months ago
2
fa file
#444
DangPengsanqi
closed
3 months ago
1
Combining RM rows
#443
aerilli
opened
3 months ago
5
The inconsistency between the classification labels of the EDTA library and RepeatMasker
#442
CSU-KangHu
closed
3 months ago
1
ERROR: Intact TE annotation not found in Aros.genome.fa.mod.EDTA.intact.gff3 at EDTA.pl line 638.
#441
chun-he-316
opened
3 months ago
2
make_masked.pl Permission denied
#440
chun-he-316
opened
3 months ago
1
ERROR in TE annotation stats
#439
shiyi-pan
opened
3 months ago
9
Use of uninitialized value $iden in numeric lt (<) at /home/data/ycy/sofw/EDTA/util/TE_purifier.pl line 184.
#438
CongyangY
closed
3 months ago
2
Two genomes LTR result file has 0 bp, while the others are not.
#437
ZhuYongli1212
opened
3 months ago
3
the pipeline about panEDTA
#436
QianghuiZhu
closed
3 months ago
6
panEDTA for metazoans
#435
adeoliveira86
closed
3 months ago
5
Inflated TE counts and masked bp in EDTA annotation after removal of part of the genome
#434
Nyasita
opened
3 months ago
3
Exploring the Discrepancies between TEanno.gff3 and TElib.fa
#433
khjia
opened
4 months ago
2
making the output gff3 valid
#432
colindaven
closed
3 months ago
4
Concatinating CDS files for panEDTA
#431
Isoris
opened
4 months ago
1
EDTA_2.2.x.yml seems not working
#430
Yutang-ETH
closed
3 months ago
7
Testing output
#429
G-Thomson
opened
4 months ago
4
Benefit of using panEDTA
#428
Isoris
closed
3 months ago
1
EDTA crahed after no SINE found
#427
CongLiu37
closed
2 months ago
11
TIR filtration
#426
bijendrabio
closed
3 months ago
3
2024-01-30 02:12:48,620 -WARNING- Grid computing is not available because DRMAA not configured properly:
#425
mirror110
closed
4 months ago
1
PanEDTA Line Detection
#424
sjteresi
opened
4 months ago
7
Rerun EDTA 2.2.0 with results from older version
#423
CongLiu37
closed
4 months ago
8
resubmit jobs
#422
8Purplegrapes
closed
3 months ago
1
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