oushujun EDTA issues - Githubissues

oushujun / EDTA

Extensive de-novo TE Annotator

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y

GNU General Public License v3.0

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issues

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Can I concatenate EDTA library and Repbase library manually?

#472 Marh32 opened 5 days ago
0
.mod.EDTA.TEanno.sum was empty

#471 Jimpann97 opened 1 week ago
0
Locate source of annotation

#470 fungal-spore opened 2 weeks ago
0
Test file failed

#469 xiaoxiao349 opened 2 weeks ago
0
test data

#468 wwenc opened 3 weeks ago
6
use command -v instead of which

#467 mikerenfro opened 1 month ago
0
several issues in the ruuning of EDTA2

#466 yanyew opened 1 month ago
0
Using CDS from multiple species

#465 bijendrabio opened 1 month ago
0
For the RepeatModeler step why throw logs to 2>null?

#464 Isoris opened 1 month ago
0
panEDTA timing out on large genomes

#463 joannarifkin opened 1 month ago
2
TE_XXX in gff3 from panEDTA

#462 CongLiu37 opened 1 month ago
0
Unusual Output and Failure During Regular Annotation

#461 sjteresi opened 1 month ago
0
solve '*.mod.EDTA.TEanno.sum' empty

#460 ZJin2021 opened 1 month ago
3
Statistical genome size

#459 ltswx opened 1 month ago
0
'调用失败'

#458 Xxi-GitHub opened 1 month ago
8
ERROR: TE annotation stats results not found in B.purpurea.fasta.mod.EDTA.TE.fa.stat!

#457 Qikiiso opened 2 months ago
1
LINE and SINE results files has 0 bp!

#456 XuanZhang-Black opened 2 months ago
0
[No LINE, EDTA 2.2.0] Empty LINE file after RM2

#455 Isoris opened 2 months ago
0
PanEDTA test output

#454 AnaKurdadze opened 2 months ago
0
Stuck by BLAST in LTR finding

#453 Yutang-ETH closed 2 months ago
2
文件缺失

#452 Blosers opened 3 months ago
1
TIR not found?

#451 CongLiu37 closed 1 month ago
1
I just found that this script in the (../../share/RepeatMasker/) folder will not have this error, maybe can copy the input file, I think it can try?If you tried, can you tell me the result?

#450 chenHuiRu8 opened 3 months ago
3
Hey!Have you solved your problem? I had the same problem.

#449 chenHuiRu8 opened 3 months ago
1
Can't locate SearchResult.pm in @INC (you may need to install the SearchResult module)

#448 chenHuiRu8 closed 3 months ago
3
Would you consider adding -w $genome_file_real_path.EDTA.raw/TIR to line 576 of EDTA_raw.pl

#447 Yutang-ETH closed 3 months ago
1
dependencies not found in singularity install

#446 molikd opened 3 months ago
4
ERROR: TE annotation stats results not found in mod.EDTA.TE.fa.stat!

#445 CrayonLinchan closed 3 months ago
2
fa file

#444 DangPengsanqi closed 3 months ago
1
Combining RM rows

#443 aerilli opened 3 months ago
5
The inconsistency between the classification labels of the EDTA library and RepeatMasker

#442 CSU-KangHu closed 3 months ago
1
ERROR: Intact TE annotation not found in Aros.genome.fa.mod.EDTA.intact.gff3 at EDTA.pl line 638.

#441 chun-he-316 opened 3 months ago
2
make_masked.pl Permission denied

#440 chun-he-316 opened 3 months ago
1
ERROR in TE annotation stats

#439 shiyi-pan opened 3 months ago
9
Use of uninitialized value $iden in numeric lt (<) at /home/data/ycy/sofw/EDTA/util/TE_purifier.pl line 184.

#438 CongyangY closed 3 months ago
2
Two genomes LTR result file has 0 bp, while the others are not.

#437 ZhuYongli1212 opened 4 months ago
3
the pipeline about panEDTA

#436 QianghuiZhu closed 4 months ago
6
panEDTA for metazoans

#435 adeoliveira86 closed 4 months ago
5
Inflated TE counts and masked bp in EDTA annotation after removal of part of the genome

#434 Nyasita opened 4 months ago
3
Exploring the Discrepancies between TEanno.gff3 and TElib.fa

#433 khjia opened 4 months ago
2
making the output gff3 valid

#432 colindaven closed 4 months ago
4
Concatinating CDS files for panEDTA

#431 Isoris opened 4 months ago
1
EDTA_2.2.x.yml seems not working

#430 Yutang-ETH closed 4 months ago
7
Testing output

#429 G-Thomson opened 4 months ago
4
Benefit of using panEDTA

#428 Isoris closed 4 months ago
1
EDTA crahed after no SINE found

#427 CongLiu37 closed 2 months ago
11
TIR filtration

#426 bijendrabio closed 3 months ago
3
2024-01-30 02:12:48,620 -WARNING- Grid computing is not available because DRMAA not configured properly:

#425 mirror110 closed 4 months ago
1
PanEDTA Line Detection

#424 sjteresi opened 4 months ago
7
Rerun EDTA 2.2.0 with results from older version

#423 CongLiu37 closed 4 months ago
8