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oushujun
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EDTA
Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
GNU General Public License v3.0
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resubmit jobs
#422
8Purplegrapes
closed
3 months ago
1
LINE search takes much longer compared to other steps
#421
foriin
opened
5 months ago
3
LTR retriever fails
#420
foriin
closed
5 months ago
5
Update README.md - small change to the ver of rice library
#419
hyphaltip
closed
5 months ago
0
TIR-Learner does not run properly in EDTA v2.2.0
#418
cowriegump
closed
5 months ago
11
ERROR:EDTA.pl line 583
#417
Astesimal
opened
5 months ago
5
Evaluating the results of an already finished EDTA pipeline run
#416
adeoliveira86
closed
5 months ago
1
The use of EDTA_raw.pl and EDTA.pl
#415
qdu-beep
closed
5 months ago
2
Can I install it using source code on an ARM machine?
#414
z4668640
closed
5 months ago
7
conda activate EDTA?
#413
8Purplegrapes
opened
6 months ago
5
panEDTA
#412
8Purplegrapes
closed
4 months ago
10
Is EDTA suitable for Animal genomes
#411
JINPENG-WANG
opened
6 months ago
4
Is it acceptable to use rice or Arabidopsis thaliana to calculate the LTR insertion time of basal angiosperms?
#410
XXH123a
closed
6 months ago
2
Use docker image to drive GitHub version EDTA
#409
Wanjie-Feng
opened
6 months ago
6
The LTR result file has 0 bp!
#408
bvs
closed
5 months ago
3
Unsafe argparse in the `cut.pl`
#407
baozg
closed
5 months ago
2
Should I rewrite the previous results ?
#406
tongyin121
opened
6 months ago
7
Can this tool be used in the genomes of bacteria, archaea and fungi?
#405
RuolinHe
closed
6 months ago
2
no sine?
#404
Xinxin0314
closed
5 months ago
2
An empty EDTA.TElib.novel.fa was generated after perform EDTA.
#403
Github-Yilei
closed
7 months ago
2
right and left LTR length query
#402
katieemelianova
closed
6 months ago
2
Overlapping TEs
#401
bijendrabio
closed
5 months ago
1
Updated docker container
#400
mrmrwinter
opened
7 months ago
1
Helitron results file has 0bp!
#399
Toffeeladd
opened
8 months ago
6
The statistical results of the EDTA.TEanno.gff3 and the EDTA.TEanno.sum are inconsistent.
#398
zy66-su
closed
7 months ago
2
Structural TEs appear not to be renamed by panEDTA
#397
joannarifkin
opened
8 months ago
6
lib-test.pl -std and -tst must have different input file name
#396
qjiangzhao
closed
8 months ago
1
CACTA
#395
bijendrabio
closed
8 months ago
1
Error when running panEDTA
#394
smallfishcui
closed
4 months ago
4
genome.fa problem
#393
xiaomifeng12
closed
5 months ago
7
SLURM-specific behavior: repeat content dramatically reduced but no errors
#392
laramiemckenna
opened
9 months ago
12
Further classification
#391
SC-Duan
closed
8 months ago
4
Are "Unknowns" Unknown TEs or generally unknown repeats?
#390
isabelladistefano
closed
9 months ago
3
LTR_retriever": No such file or directory at /home/ubuntu/deru/EDTA/EDTA_raw.pl line 307.
#389
karthickbrlab
closed
7 months ago
6
Multiple EDTAs in parallel
#388
chao77777777
closed
8 months ago
1
LAI
#387
Xinxin0314
closed
9 months ago
2
LAI values from LTRRetrivar
#386
ankush290307
closed
9 months ago
1
CACTA
#385
bijendrabio
closed
9 months ago
4
Many overlapping regions of TE
#384
XXboop
closed
8 months ago
1
There are many overlapping regions of TE
#383
XXboop
closed
9 months ago
0
Empty sum file, gff2bed errors
#382
SwiftSeal
closed
7 months ago
4
Question about MITEs
#381
tongyin121
closed
3 months ago
1
Question about threads
#380
chao77777777
closed
9 months ago
2
error: LTR_retriever is not found in the LTR_retriever path ./!
#379
karthickbrlab
closed
7 months ago
3
I have a question, why are the.mod.edta.teanno.gff3 and.mod.EDTA.TEanno.out lines different
#378
OUC-ZJH
closed
10 months ago
4
stats file is null
#377
HaoWenhy
closed
5 months ago
8
TE comparsions in different species
#376
YuboWang1994
closed
10 months ago
2
panEDTA path specification
#375
joannarifkin
closed
3 months ago
20
Fasta file issue
#374
Ramkyeri
closed
5 months ago
21
Benchmarking not as expected.
#373
isabelladistefano
opened
11 months ago
6
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