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oushujun
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EDTA
Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
GNU General Public License v3.0
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Annotation issue still there in v2.1.3
#372
sahoo-rk
closed
7 months ago
2
No TE_struc_xxx file generated
#371
shiyi-pan
closed
11 months ago
6
Assigning manual $protlib
#370
sahoo-rk
closed
11 months ago
2
ERROR: The curated library file is not found or is empty
#369
linshengnan09
closed
10 months ago
1
many TEs in genes
#368
jzohren
closed
5 months ago
5
Running for abnormal long time
#367
ChenJH-ZHUYI
closed
8 months ago
4
Please!
#366
ZhouTaoWang
closed
10 months ago
2
TIR learner files missing error
#365
katieemelianova
closed
1 year ago
2
A new error for LTR
#364
SC-Duan
closed
1 year ago
3
Singularity and panEDTA
#363
joannarifkin
opened
1 year ago
9
Still confused about the use and results of EDTA
#362
zhangwenda0518
closed
6 months ago
5
Errors while testing panEDTA
#361
blavetn
closed
1 year ago
2
some TE sequences in *.mod.EDTA.TElib.fa cannot be found in *.mod.EDTA.TEanno.gff3
#360
hyma99
closed
10 months ago
1
about the step of re-annotate all genomes with the panEDTA library
#359
Scy-bio
closed
1 year ago
2
Chromosome names from $genome.EDTA.intact.gff3 are different with my genome file chromosome names
#358
qjiangzhao
closed
1 year ago
1
How to treat high helitron results ?
#357
zhangwenda0518
closed
1 year ago
1
Get trouble when use EDTA to annotate Repbase sequences
#356
unavailable-2374
closed
10 months ago
2
EDTA have problem to identify LTR-RT when an intact LTR-RT close with a solo LTR-RT that is from the same family.
#355
qjiangzhao
opened
1 year ago
5
Resolve issue #281
#354
lutianyu2001
closed
1 year ago
0
Why the sequence masked in “.mod.masked” is greater in number than that in "mod.MAKER.masked"?
#353
lpzoaa
closed
1 year ago
1
EDTA has problem to deal with nested LTR-RT
#352
qjiangzhao
opened
1 year ago
2
ERROR: Final TE library not found in genome.fa.mod.EDTA.TElib.fa at /biodata/biosoft/conda/envs/EDTA/share/EDTA/EDTA.pl line 578.
#351
Keliang-Lyu
closed
1 year ago
2
RepeatModeler is finished, but no consensi.fa files found
#350
minhasbushra
closed
1 year ago
6
TE differences between different rice varieties
#349
yingnansun
closed
1 year ago
1
Why the highly similar sequence didn't be annotated as a Mutator transposon?
#348
leon945945
closed
1 year ago
1
repeat_region和target_site_duplication的分类问题
#347
xizhesun
closed
1 year ago
2
Main result_files were created but EDTA.pl still runned a long time
#346
lvqiang0120
closed
10 months ago
3
Whether curatedlib will be processed (remove redundancy and filter) before generating Final TE library used for annotation?
#345
Taoo777
closed
1 year ago
1
How to run EDTA final after RepeatModeller?
#344
arslan9732
closed
1 year ago
2
如何将RepeatMasker中的内容导入到EDTA?
#343
maruiqi0710
closed
1 year ago
1
TE sequence derived from mod.EDTA.intact.gff3 is different with the corespond TE from mod.EDTA.TElib.fa
#342
qjiangzhao
closed
1 year ago
3
Rerun final annotation step on modified genome using previously generated TE family file
#341
ZexuanZhao
closed
1 year ago
1
RepeatMasker
#340
jia-wu-feng
closed
1 year ago
2
softmasking
#339
bijendrabio
closed
1 year ago
2
Raw Helitron results not found but they exist
#338
katieemelianova
closed
1 year ago
4
ERROR: RepeatMasker results not found in genome.FINAL.fasta.mod.out!
#337
panpandzf
closed
1 year ago
3
error with LTRs
#336
JoseLopezArcondo
closed
1 year ago
2
RepeatModeler BuildDatabase line 333
#335
bijendrabio
closed
1 year ago
1
Issues related to the interpretation of the results of TEanno.gff3 and TElib.fa
#334
Song-10-YF
opened
1 year ago
1
Question related to TE library generated by EDTA+curlib+cds vs RpeatModeler2
#333
BenAawf
closed
10 months ago
3
LINE and SINE
#332
bijendrabio
closed
1 year ago
3
Difference in metrics between sum and gff3 files
#331
clauderispe
closed
1 year ago
1
Can't load Encode.so
#330
theo-allnutt-bioinformatics
closed
1 year ago
3
Evaluation step
#329
bijendrabio
closed
1 year ago
1
Error
#328
clauderispe
closed
1 year ago
1
No space left on device
#327
AMartinsJr
closed
1 year ago
5
Question: pan EDTA usage of CDS FASTA
#326
sjteresi
closed
1 year ago
6
Question about the results of TE-abundant genomes
#325
CSU-KangHu
closed
1 year ago
1
Curated library option possible bug
#324
swomics
closed
1 year ago
1
Can it add the specific classification of line and sine?
#323
wpf95
closed
1 year ago
1
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