issues
search
oushujun
/
EDTA
Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
GNU General Public License v3.0
336
stars
73
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Chr9 of Rice(NIP) 4M do not have TE ?
#508
GooLey1025
opened
5 days ago
2
Invalid value for shared scalar at /public/home/kanaconda3/envs/edta/share/LTR_retriever/bin/LT
#507
Hanjiangna
opened
1 week ago
1
Error: Error while loading sequence perl filter_gff3.pl file.gff3 file.list > new.gff3
#506
huaixiaolu
opened
1 week ago
1
TIR-Learner error
#505
qfh20m20m
opened
1 week ago
1
EDTA_raw.pl LINE analysis stalls
#504
afurches
closed
2 days ago
2
How to continue running make_panTElib.pl
#503
Xuuuurj
opened
2 weeks ago
2
LTR not found in plant genome
#502
LeoVincenzi
opened
2 weeks ago
1
cannot create temporary file in '/scratch/363641.1.all.q
#501
bijendrabio
opened
3 weeks ago
0
EDTA_2.2.x.yml relies on anaconda channel
#500
SwiftSeal
opened
1 month ago
1
EDTA.pl 1.9版本,转换成EDTA.pl 2.2版本哪些过程可以跳过;
#499
LengFeng00
opened
1 month ago
2
combine_RMrows.pl erro
#498
jwli-code
opened
1 month ago
0
An error in the LTR.identifier.pl
#497
zyy36920
opened
1 month ago
5
Ltr finder
#496
jguhlin
closed
1 month ago
0
handling snRNA identifier, and other unknown repeat classes
#495
malia-is-a-squid
opened
1 month ago
0
gff2bed.pl doesn't recognize "snRNA" repeat class; leads to an empty .sum file
#494
malia-is-a-squid
opened
1 month ago
1
unknown/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation.
#493
jwli-code
opened
1 month ago
0
Update buildSummary.pl
#492
FayeFang17
opened
1 month ago
0
LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation.
#491
liangchengbo
opened
1 month ago
3
awk: fatal: cannot open file `genome.fa.mod.pass.list' for reading: No such file or directory
#490
Dorrie1041
closed
1 month ago
0
An error when running ‘test’, probably related to 'bedtools'
#489
liangchengbo
opened
1 month ago
15
NestTE out
#488
porkfan
closed
2 months ago
2
When I run PanEDTA, it seems to rerun EDTA from scratch for each chromosome instead of starting the merging process directly.
#487
dongaoqian
opened
2 months ago
0
How to identify the structure feature of a TE sequence
#486
leon945945
opened
2 months ago
1
singularity ERRO
#485
jwli-code
opened
2 months ago
3
ValueError: File format not supported
#484
jwli-code
opened
2 months ago
5
Warning: LOC list - is empty
#483
wangyangXie
opened
2 months ago
7
ERROR: Identify TIR candidates from scratch
#482
Lee951108
closed
1 month ago
3
No space left on device
#481
ycgong
opened
2 months ago
3
Repeat masker stalling
#480
yanarizzieri
opened
2 months ago
3
CrossmatchSearchEngine::parseOutput issue
#479
cai1991
opened
2 months ago
0
TIR-Learner error
#478
amandine-velt
closed
1 month ago
5
Same ID for LTR-RT _LTR and _INT families in panEDTA
#477
lanasushko
opened
2 months ago
0
singularity install not working
#476
tallnuttrbgv
closed
2 months ago
1
singularity install takes >18 hours / freezes
#475
tallnuttrbgv
closed
2 months ago
1
Error: The RMblast engine is not installed in RepeatMasker!
#474
tallnuttrbgv
closed
2 months ago
1
Evirus/ERTBV-C not found in the TE_SO database
#473
SC-Duan
opened
2 months ago
1
Can I concatenate EDTA library and Repbase library manually?
#472
Marh32
opened
3 months ago
1
.mod.EDTA.TEanno.sum was empty
#471
Jimpann97
opened
3 months ago
1
Locate source of annotation
#470
fungal-spore
opened
3 months ago
1
Test file failed
#469
xiaoxiao349
opened
3 months ago
0
test data
#468
wwenc
closed
1 month ago
6
use command -v instead of which
#467
mikerenfro
closed
2 months ago
1
several issues in the ruuning of EDTA2
#466
yanyew
opened
4 months ago
0
Using CDS from multiple species
#465
bijendrabio
opened
4 months ago
1
For the RepeatModeler step why throw logs to 2>null?
#464
Isoris
closed
1 month ago
1
panEDTA timing out on large genomes
#463
joannarifkin
opened
4 months ago
4
TE_XXX in gff3 from panEDTA
#462
CongLiu37
opened
4 months ago
0
Unusual Output and Failure During Regular Annotation
#461
sjteresi
opened
4 months ago
0
solve '*.mod.EDTA.TEanno.sum' empty
#460
ZJin2021
closed
1 month ago
5
Statistical genome size
#459
ltswx
closed
1 month ago
1
Next