rmhubley RepeatMasker issues

rmhubley / RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

Other

214 stars 48 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

How to reduce memory cost?

#261 yhli1992 opened 1 week ago
4
Will N have an impact on blast n if RepeatMask uses hard masking and generates N from repeated sequences?

#260 helloworldABCD1234 opened 2 weeks ago
1
Bypass dfam

#259 tzvi909 opened 4 weeks ago
0
Penelope annotation

#258 anna-elisabet opened 1 month ago
0
How to solve the ERROR: "The assumed RepeatMasker: /opt/home/sony/miniconda3/envs/MAKER2/share/RepeatMasker does not appear to be correct. E.g it does not contain a 'Libraries' or 'Matrices' subdirectory. "?

#257 nguyenvantuananh99 opened 1 month ago
0
Is there a way to make RM work on Linux with GLIBC < 2.31?

#256 rpianezza closed 1 month ago
0
No RepeatMasker.lib.* files created with FamDB HDF5 partitions

#255 carolindahms closed 2 months ago
1
Issue in configuration of RepeatMasker in HPC cluster

#254 manighanipoor opened 2 months ago
0
allow RM2Bed to read and write from pipes

#253 ASLeonard opened 3 months ago
0
Could not create repeat landscape custom Satellite -lib, Error; Not enough columns given to draw the requested chart. createRepeatLandscape.pl

#252 salmanento closed 2 months ago
1
I cannot found repeatmasker by the time it is installed

#251 josekani17 opened 3 months ago
0
Is RepeatMasker suitable for use with transcriptomes?

#250 Tang-pro opened 4 months ago
0
Cannot determine engine variant and version!

#249 HelloYanming opened 4 months ago
0
80kbp strecth of genome annotated as single repeat

#248 jamesdgalbraith opened 4 months ago
0
FATAL ERROR: RepeatMasker giving up

#247 dmacguigan opened 4 months ago
0
Unable to find RepeatMaskerLib.h5 during installation

#246 darencard closed 4 months ago
1
Repeat Annotations

#245 anna-elisabet opened 4 months ago
5
Obtain an Align file

#244 awieeeee closed 4 months ago
1
Can I run ProcessRepeats in parallel?

#243 life404 opened 5 months ago
2
RepeatModeler stuck at "Running all-by-other comparisons"

#242 Ruiqi-CUB closed 5 months ago
3
Species "all" is not known to RepeatMasker when running -species all

#241 Ruiqi-CUB closed 6 months ago
4
Development

#240 rmhubley closed 6 months ago
0
New Release

#239 rmhubley closed 6 months ago
0
famdb.py and the latest version of Dfam

#238 cyycyj closed 6 months ago
7
error while installing fresh with conda

#237 splaisan closed 7 months ago
1
Error building FASTA version of RepeatMasker.lib during configuration #141

#236 smoothyly closed 7 months ago
2
The RepeatMasker.lib file is out of date.

#235 DrmBee closed 7 months ago
1
Can't locate 'setThreadByQuery' via package "NCBIBlastSearchEngine" at RepeatModeler/Refiner

#234 tania-k opened 8 months ago
1
Offline deployment install from Conda

#233 ptrebert closed 6 months ago
2
How to filter the short TE fragments from results file

#232 aijigekoukou-shen opened 8 months ago
1
Resume RepeatMasker from "processing output"

#231 CongLiu37 closed 6 months ago
1
RepeatMasker output .tbl file identifies no library elements when using Dfam library

#230 bhdobrin opened 10 months ago
9
Benchmarking of RepeatMasker

#229 isabelladistefano closed 7 months ago
1
The sum of the subclasses does not correspond to the sum of the DNA transposons.

#228 aijigekoukou-shen closed 7 months ago
1
RepeatLandscape: Could not open for reading: No such file or directory

#227 44314474 closed 7 months ago
5
Chromosome larger than one gigabase

#226 fmaumusINRA closed 7 months ago
5
The relationship between the location of Mutator transposons and exons

#225 Song-10-YF opened 11 months ago
3
Errors related to makeblastdb

#224 alopgar closed 7 months ago
5
Generate BED12 files

#223 elcortegano closed 7 months ago
1
maker fails with RepeatMasker 4.1.5

#222 ricardo-aaron closed 7 months ago
1
Conda recipe

#221 oushujun closed 11 months ago
1
Species "human" is not known to RepeatMasker.

#220 isunshine-cc closed 7 months ago
1
Bus error (core dumped)/WARNING: Comparison failed. Retrying with larger minmatch (9)/sh: line 1: 8350 Killed

#219 minhasbushra opened 1 year ago
3
error: The assumed RepeatMasker installation directory does not appear to be correct.

#218 DavidCamAr opened 1 year ago
1
HMM file format error when using custom library in FASTA format

#217 aminakur opened 1 year ago
1
The meaning of "perc div" in genome.out in main output dir

#216 Zhenlisme opened 1 year ago
1
Error message + results all "unclassified" using RepBase 28.03

#215 MarionPerrier opened 1 year ago
1
Differences in results between versions

#214 Song-10-YF opened 1 year ago
1
Confusing error message when h5py isn't found

#213 mcfrith opened 1 year ago
1
Interpreting discrepancies between alignment (.align file) and annotation (.out) and understanding how IDs are assigned.

#212 agustin-bilat closed 1 year ago
4