-
Move SeqEntry from klust project to here, including tests.
-
When I run:
```
$ rm -rf toilWorkflow/; python src/toil/wdl/wdltoil.py
```
I get this:
```
INFO:toil.lib.bioio:Logging set at level: INFO
INFO:toil.common:Using the single machine batch system
INFO…
-
PyCharm
```
/usr/local/Cellar/python/2.7.9/Frameworks/Python.framework/Versions/2.7/bin/python2.7 /Applications/PyCharm.app/Contents/helpers/pycharm/utrunner.py /Users/hannes/workspace/bd2k/toil/src/…
-
When installed from pip (pip install git+http://github.com/bd2kgenomics/toil) into a virtualenv:
> Added job: b/k/jobHAlTgv to active jobs
> Built the jobs list, currently have 1 jobs to update and 0…
-
-
As mentioned in the title, passing cache as a keyword argument to Job.wrapJobFn() does not work.
TOY CODE
```
#!/usr/bin/env python2.7
'''
Author : Arjun Arkal Rao
Affiliation : UCSC BME, UCSC Genomi…
arkal updated
9 years ago
-
I have a Toil script I want to run on ku, via Parasol, to download some stuff from Azure. It cheats and uses the credential-finding function from `toil.jobStores.azureJobStore` to find the Azure crede…
-
Dear Benedict,
I am trying to compile sonLib for mafTools and I have get this one error "ERROR: testSonLibKVTokyoCabinet (kvdbTest.TestCase)"
Traceback (most recent call last):
File "/usr/local/li…
-
**log**:
```
ip-172-31-22-168: 2016-07-24 23:09:37,127 INFO: toil.lib.bioio: Logging set at level: INFO
ip-172-31-22-168: 2016-07-24 23:09:37,127 INFO: toil.lib.bioio: Logging set at level: INFO
ip-1…
-
writeGlobalFile should be returning a jobStoreFileID that can be passed on to readGlobalFile for retrieval. I've tested this and wGF appears to be returning the value of localFileName instead. Code to…
arkal updated
9 years ago