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When trying the docker case, after scatac-init, snakemake execution gave the following:
SyntaxError in line 1160 of /software/Res/Snakefile:
EOF in multi-line statement (Snakefile, line 1160)
…
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### Introduction to GitHub flow
Now that you're familiar with issues, let's use this issue to track your path to your first contribution.
People use different workflows to contribute to software pro…
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### Description
As a developer, I want to have all the datasets according to the most recent template.
### Acceptance criteria
- [x] run validator on all datasets
- [x] list datasets that ne…
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I followed the instruction https://github.com/liulab-dfci/MAESTRO to install MAESTRO on HPC cluster for our institution research community.
My python version is 3.7.3-anaconda; conda version 4.9.2…
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Hello,
I am using MAESTRO docker image winterdongqing/maestro, 1.2.1, 57f41ffbe200. When I ran the scRNA-seq module, it reported errors like:
`unable to open file: name = '/project/dev/qqin/LI…
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Reference_allele should be `-` but in many studies they are NA or multiple `-`.
```sql
select gp.stable_id, count(*) mut_count
from mutation_event me, mutation m, genetic_profile gp
where me.mut…
jjgao updated
3 years ago
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Dear Prof. Li,
After the construction of graph genome with minigraph, have you developed software to visualize the graph genome? And whether it is possible to carry out subsequent analysis such as SV…
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I am using a for loop to analyze a the minimum distance of a series of individual atoms to a group. I am doing it in the following manner:
```python
alldist = []
for j in range(40):
dist = []
…
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I ran MAESTRO workflow using fragment file as the input file and encountered the error.
Could you let me know why I have such an error? or how to solve it?
Thank you.
Bicna
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I'm running the analysis in `R` on an RNA counts matrix I have.
Here's the code:
```
library(MAESTRO)
library(Seurat)
library(readr)
library(dplyr)
library(stringr)
library(ggplot2)
librar…