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Amber-MD
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pytraj
Python interface of cpptraj
https://amber-md.github.io/pytraj
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Support numpy 2.1.0
#1667
hainm
opened
3 weeks ago
0
dummy PR to trigger test
#1666
hainm
opened
3 weeks ago
0
Abnormal coordinate values after autoimage
#1665
Serious-Huang
closed
1 month ago
1
Consider incorporating GraphVampNet into Pytraj
#1664
hainm
opened
2 months ago
0
StrEnum
#1663
hainm
closed
3 months ago
0
refactor trajectory.py
#1662
hainm
closed
3 months ago
0
AnalysisRunner
#1661
hainm
closed
3 months ago
0
pytestify
#1660
hainm
closed
3 months ago
0
WIP - CI with python-version: [3.11, 3.12]
#1659
hainm
opened
3 months ago
0
DO NOT MERGE. TESTING CI.
#1658
hainm
closed
3 months ago
0
Refactor all_actions.py (mostly beautify it)
#1657
hainm
closed
3 months ago
0
Chain ID is now a string as of cpptraj version 6.27.0
#1656
drroe
closed
3 months ago
2
Trying to pip install pytraj
#1655
FezokaTurbo
opened
4 months ago
1
pytraj not compatible with OSX-arm64 arch
#1654
xiki-tempula
opened
4 months ago
0
nh_order_parameters
#1653
keebborg
opened
4 months ago
0
How do I import pytraj?
#1652
d-beltran
closed
5 months ago
4
pmap parallel error
#1651
groponp
opened
6 months ago
6
rdf action should be able to return the raw-rdf values
#1650
DrDomenicoMarson
closed
8 months ago
7
cython: language_level : "3"
#1649
hainm
closed
8 months ago
0
pytraj segmentation fault with cython 3.0 and cpptraj commit f1d21f688de5ea5c55e650abe6efdbc352bdc613
#1648
hainm
opened
9 months ago
1
Reporting Issues with Pytraj using tutorials
#1647
PhiMykah
closed
9 months ago
28
pytraj.plot module not found
#1646
muhammadammarzahid
opened
9 months ago
2
Make binary wheel for pytraj?
#1645
hainm
opened
9 months ago
5
hbond pmap_mpi output format
#1644
Llauset
opened
9 months ago
7
Implemented "count in voxel" function
#1643
sastrys1
closed
11 months ago
4
Count in voxel
#1642
sastrys1
closed
12 months ago
0
added closest_atoms function to all_actions.py and wrote test code (WIP)
#1641
sastrys1
closed
12 months ago
8
Function to find the atoms of a given mask that appear in a region of xyz coordinate space?
#1640
sastrys1
closed
12 months ago
10
Help: error building pytraj native library when make install 91%
#1639
kinfunny
closed
1 year ago
10
test PR
#1638
hai-schrodinger
closed
12 months ago
0
ModuleNotFoundError: No module named 'pytraj.core.topology_objects'
#1637
JSurayut
closed
9 months ago
15
Fix python 3.11 test issues
#1636
drroe
closed
1 year ago
0
Fix randomizeions test
#1635
drroe
closed
1 year ago
4
metadata -> crdinfo
#1634
hainm
closed
1 year ago
0
Spurious Test Failures with Cpptraj
#1633
drroe
closed
1 year ago
9
Has anyone tried a Python 3.11 conda package build yet?
#1632
swails
closed
1 year ago
11
Try to fix some test warnings that can be errors on certain platforms.
#1631
drroe
closed
1 year ago
1
energy_decompostion throws "Fortran runtime error: Bad value during integer read"
#1630
spadavec
closed
1 year ago
1
Installation error of pytraj with pip
#1629
RajarshiRay25
opened
1 year ago
4
calculated basepair matches in pytraj
#1627
cloudella48
opened
1 year ago
2
wrong major groove calculation
#1626
cloudella48
opened
1 year ago
8
Update nucleic_acid_analysis.py: skip nxyz for now
#1625
hainm
closed
1 year ago
0
Pytraj nastruct needs to be updated to handle [nxyz] data
#1624
drroe
closed
8 months ago
9
Typo in Output of _explain() Function
#1623
bdemir09
closed
1 year ago
1
Import python build fix for AmberTools cmake.
#1622
drroe
closed
1 year ago
2
Support trajin -type option for loading trajectory?
#1621
hainm
opened
1 year ago
0
Incorrect box dimensions when writing .rst7 from .dcd
#1620
tuckerburgin
opened
1 year ago
4
Amber22 installation: "source /home/xxxx/amber22/amber.sh" and "make test.serial" errors
#1619
ursulap
opened
1 year ago
4
Build pytraj error when installing Amber22
#1618
ursulap
opened
1 year ago
3
Fix memory leak on topology mask selection
#1617
hichiaty
closed
1 year ago
1
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