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Hello,
I'm trying to create a Diamond reference database for the Uniprot reference proteomes, but the instructions I found for the older version of BlobTools (https://blobtools.readme.io/docs/taxon…
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Hello,
I am having issues in creating a custom database and need some help in resolving the issue.
I found ``` https://github.com/DiltheyLab/MetaMaps/issues/5``` to be helpful and following that …
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file 1) list of fastas from lists, that aren't present in the fastas folder, it's mostly an issue of name format :
in the list they are named : name_1 // in the fastas folder they are named : name.…
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Hi,
I try to analyze transcription factors and kinase family-related genes using the transcriptome data. I have the unigenes file in the fasta format. I am getting an error like this.
Error: Seque…
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Hi,
I am trying to run prokka from the docker image, and keep encountering the error that my input '* is not a readable non-empty FASTA file'. The files I have tested are non empty, readable, and i…
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Files containing sequences that are annotated according to the nomenclature:
_Suggestions_:
Extension: .ptm.fasta or just .proteoforms
Format name: Proteoform format, PTM format
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Some users will have genetic data beyond the scope of our basic test case developed against SPLASH, including long form sequence information. As an example, Scott mentioned the FASTA format:
http://en…
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I read the README, and it appeared that genbank files were the only supported format for input, but I see in the issues (e.g., https://github.com/gamcil/clinker/issues/10) that fasta + gff is supporte…
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Hi, I tried converting a .geneious file to fasta format. I'm working on Mac OSX, and I tried running the following command:
perl geneious_to_fasta.pl -i Mygenome.geneious
But nothing happens. I would…
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**Steps to Reproduce**
1. Switch to Macro
2. Right pane >> RNA tab >> Presets >> Select one of Preset
4. Save >> Select 'FASTA' >> Save
5. Open this FASTA file Again
**Actual behavio…