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Recently, I am unable to download the Giotto package for installation. In the past I have been able to use the following command while following the CosMx vignette without issue:
`devtools::install…
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Hi team,
Just a quick note to say that when trying to pull the mini-seqFISH data through getSpatialDataset() function mentioned [here](https://giottosuite.readthedocs.io/en/latest/subsections/datase…
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When I tried to change the version of python, I got followed message.
ERROR: The requested version of Python
('/home/lcy/.local/share/r-miniconda/envs/giotto_env/bin/python') cannot be used,
as …
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Hello everyone,
I am doing interactive selection in Giotto with R studio.
my_polygon_coordinates
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When I try to install
```
devtools::install_github('drieslab/GiottoUtils')
```
I get the error below
```
Error: object ‘assert_permutation’ is not exported by 'namespace:checkmate'
```
the ver…
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Hello everyone,
While generating visium object in Giotto in R studio, I get an error:
instrs = createGiottoInstructions( python_path = 'C:/Users/AppData/Local/r-miniconda/envs/giotto_env/python.…
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Hello everyone,
While running the interactive selection in Giotto in R studio, I get an error:
#Load visium data
load("C:/Users/yilmazha/Desktop/visium_data.Robj") #That works
#Transform the…
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**Describe the Error**
For some reason, with my CosMx data the `addCellMetadata` command triggers a sort of the cell rows in the giotto object (it doesn't do this with the starmap mini, vizium mini…
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Hello,
I would like to use reticulate in RStudio for scrnaseq analysis. I am currently going through a tutorial (https://www.sc-best-practices.org/introduction/analysis_tools.html) and am running i…
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Hi, When I am converting gitto object into spata2 object for cnv analysis , I am getting error :
spata2_obj