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Hi, I am new to canu. Running canu with sample e.coli data set caused the following error.
```
Found perl:
/usr/bin/perl
perl: warning: Setting locale failed.
perl: warning: Please check tha…
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Hey
I'm getting a similar issue to #1589, I tried all the steps listed there (deleting the output folder and i should have ~26x) but still getting the same issue
my command is:
```#SBATCH --n…
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I'm running into problems like this (I have only 16GB of RAM on my test machine, so it's pretty easy to run out of memory).
```
[smoothxg::smoothable_blocks] computing blocks
[smoothxg::smoothabl…
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Hi,
I have two question regarding deduplication of CanuTrio assemblies.
I have haplotype assemblies after CanuTrio that according to BUSCO are complete (97%) but 15% duplicated.
It seems that dupli…
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Hi pcadapt developers,
First of all, thanks for creating this useful tool. Second, I’d like to ask 3 questions:
1) I evaluated if LD might be an issue in my Pool-Seq dataset by looking at the plot…
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I have tried running extractHAIRS with the same file in two different system.
It works well in one system and have segmentation fault in others. I have observed that once the system throws segmentati…
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Hi,
I've tried installing from source, using conda and using a docker container docker but I get "Illegal instruction" when I run octopus. Not sure what I can try?
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Hey guys,
I am getting this error from my HapCUT2 output:
```
Exception in thread "main" java.lang.IllegalArgumentException: requirement failed: Did not parse at least 11 fields (parsed 1) in t…
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Dear CANU team,
I attempted to assemble nanopore reads to get a bacterial genome (2.5Mbp). I provided excessive nanopore reads regarding the theoretical genome size (10Gbp, ie ~4000X depth) compared …
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Hello,
I'm new to bioinformatics, and I'm using Canu 2.0 to correct pacbio long reads. The script is run on Windows 10, using slurm.
This is the canu script used:
```
#!/bin/bash
#SBATCH --…