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---
id: vcell
version: 7.4.0.24
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.4.0.24/biosimulators.json
specificationsPatch:
version: 7.4.0.24
image:
url: ghcr.io…
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There's two things we'd ideally do next to reduce the data we're pulling from the API to populate
Reasons for processing out information
- List of visualizations in the view route
- Filter simula…
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To move forward on the recurring issues of grouping OBO ontologies into some useful macroscopic categories/domains, there were a few proposals:
- @zhengj2007 [Proposal](https://docs.google.com/spre…
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---
id: smoldyn
version: "2.67"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/203bf3765b230fba69defdc580d3e00a71fdef26/biosimulators.json
specificationsPatch:
version: "2.67…
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---
id: smoldyn
version: "2.67"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/34d749edb1026c8b8698a862f26277e646f330c6/biosimulators.json
specificationsPatch:
version: "2.67…
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---
id: bionetgen
version: 2.6.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_BioNetGen/2ad155e001131790feb5ffaf24a2c015f4e1e067/biosimulators.json
specificationsPa…
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The kisao ids have been switched for seed and absolute tolerance in the specification and are incorrect at many places.
`KISAO:0000211 : absolute tolerance`
`KISAO:0000488 : seed`
E.g.
> NOTE: t…
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---
id: bionetgen
version: 2.6.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_BioNetGen/05c6aa37237d2b1f443eda55815df50ac17af151/biosimulators.json
specificationsPa…
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`sum (ignoring NaN)` and `product (ignoring NaN)` are still missing from KISAO to have full coverage of the L1V3 reducing math functions.
I will fix this as part of the updates in
https://github.…
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---
id: amici
version: 0.11.18
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_AMICI/10308106336e990edbf1939e0814b6ea6f7ecadb/biosimulators.json
specificationsPatch:
…