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Is there any further normalization or transformation of the CMP scores required if one would like to compare the CMP scores of each metabolite between two groups? In the original [paper ](https://micr…
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Dear ALL,
I was wandering about the truncLen parameter settings in filterAndTrim that you would suggest for the reads, the QC graphs of which are attached as the PDF files.
I used primers 341F a…
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We have included a mock community sample in our analysis.
This mock comprises 8 species.
Dada produces 273 ASVs for this sample.
When we cluster the ASV sequences with decipher they form 8 well def…
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Any plans on creating a reference database of bacteria and archaea?
If no, can you please provide the details on how you constructed the bacterial reference database? I can't find any info on that…
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See the README here : https://github.com/mortonjt/q2-ancombc/tree/main/q2_ancombc/tests
I'm having trouble running a ANCOM on a simple scenario. If I run
`run_ancombc.R Rdata/input.biom.tsv Rdata…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/microbiome/mia
Confirm the following by editing e…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/microbiome/microbiomeDataSets
Confirm the followi…
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All the terms listed below have been approved for inclusion in the new "Food" package to be included in v6. I am adding this list here to enable a history of the new terms to be included in the repo a…
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Hello,
I'm using phangorn (v. 2.5.5) in R studio (64-bit, R-3.6.3) to analysis my 16S data. I follow the workflow for microbiome by [Callahan et al. (2017)](https://bioconductor.org/help/course-mate…
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In Results section [Metagenome sketches can be accurately decomposed into constituent genomes by a greedy algorithm, 'gather'](https://github.com/dib-lab/2020-paper-sourmash-gather/blob/e4b195539946e1…