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http://www.cbs.dtu.dk/services/NetMHCpan/
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1
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from mhctools import NetMHCpan
predictor = NetMHCpan(alleles=["A*02:01", "hla-a0101"])
this wiill raise error "FileNotFoundError: [Errno 2] No such file or directory: 'netMHCpan': 'netMHCpan'"
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* pvactools version: 1.2.0 - docker image
When running with 8 threads (via pvacvector), I see a few of these in the err log:
Allele HLA-B*57:03 notRunning IEDB on Allele HLA-B*57:03 and Epi…
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I am getting these messages from pVACSeq:
```
> Allele DPA1*01:03 not valid for Method NNalign. Skipping.
> Allele DPA1*01:03 not valid for Method NetMHCIIpan. Skipping.
> Allele DPA1*01:03 not …
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* pvactools version: 1.3.3
* Python version: 3.5
* Operating System: Ubuntu
**Describe the bug**
I install pvactools in conda, then execute a test.vcf file and it stops, from what I can read it'…
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Reporting 2 runs with different inputs and different failures:
1)
I first tried pVACvector with a list of the best peptide per variant from my pVACseq results, which contained 24 peptides. It erro…
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working directory: `/gscmnt/gc2547/griffithlab/yafeng/PRAD`
command: `pvacfuse run --net-chop-method cterm --netmhc-stab --iedb-install-directory /gscmnt/gc2502/griffithlab/yafeng -e 8,9,10,11 TCGA…
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* pvactools version:1.1.1
* Python version:3.6.5
* Operating System:linux
**Describe the bug**
when i provide a phased vcf file to run pvacseq analysis. VEP used to annotate all vcf file. Getti…