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Dear Dr. Zhang and Co-authors,
I hope this message finds you well. I have been closely studying your recent publication, "Telomere-to-telomere Citrullus super-pangenome provides direction for water…
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Sir,
I am running the roary step-by-step tutorial.
I am stuck in the last part of the exercise. After running the following:
"select '>'|| cod || '|' || locus_sequence.locus || '|' || pangenoma…
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Hi
I'll be starting a new pangenome project shortly and was wondering if anyone had any advice on how to go about generating a pangenome graph from a hexaploidy genome.
Previously with a diploid…
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### Description of feature
### Description of feature
Hi,
I found [Panache](https://github.com/SouthGreenPlatform/panache) a web-based interface designed for the visualization of linearized pange…
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Hi,
first of all thank you for your outstanding contribution to pangenomic studies!
I have incurred in this problem when using panviz and panvizgenerator:
"name must uniquely match one column i…
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it would seem to make sense to have the sgc queries be done on pangenomes at the species or genus level, rather than individual genomes.
we could accomplish this by grouping the gathered genome wit…
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I am finding this snakemake code excellent, in the sense that it allows one to reproduce and analysis, but difficult in the sense that it is not very transparent. It further seems hard-wired to certa…
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## The need
When saving an SVG from the interactive interface, we're missing the color scale for any data displayed as "intensity".
A typical example is when we have an ANI heatmap on top of a pa…
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Hi @AndreaGuarracino,
when I am running the default pggb with DRB1-3123 I do get one graph component aka one community:
![image](https://user-images.githubusercontent.com/10184961/212730802-4634…
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Hello author, I have a question about reference-free methods. Progressive Cactus is a reference-free multi-genome alignment, and it seems to be independent of the reference genome during the alignment…