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This should include a description of the different viewers available, a screenshot of the new interface, and maybe a mention of "pangenomics" to pull in the hipsters.
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In the current design, it is very hacky/difficult to work with gene collections when you want codon sequences and values like 'codon_order_in_gene' and 'base_pos_in_codon', because noncoding genes do …
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Hi,
I'm having trouble while running the pangenomic workflow.
this command ``` anvi-gen-genomes-storage -e external-genomes.txt -i internal-genomes.txt -o electrogenes-GENOMES.db ```
gives me …
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I am trying to run `prepare` in some assemblies I got directly from NCBI and I got this error:
> [2020-10-12 16:00:57] : INFO Cutting genomes at each time there are at least 5 'N' in a row, and th…
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It looks like the url to the CLR data from PacBio is broken in https://docs.google.com/spreadsheets/d/1eUXfyTqWVy9O3bYYyZdiEoWhnztUJXIf7u8X3UE-ryg/edit?usp=sharing
It's points to `https://s3-us-wes…
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What is the best way to obtain a count of specified collection of kmers. Currently, I do a 'dump' and then extract the ones I want. Is there a better way?
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This can't be a memory issue as I have 64GB on my machine and only adding 2 x 200 viral genomes
## Description of the bug
odgibuild chokes but running the following completes succesfully:
```bash…
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Hello. :)
When running the pangenomics workflow from a `fasta.txt` file containing paths to external genomes, these genomes must be in fasta format, and cannot be in fastq format. I was wondering i…
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Hi,
I am using:
Anvi'o version ...............................: esther (v6)
Profile DB version ...........................: 31
Contigs DB version ...........................: 14
Pan DB version .…
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So far I have been using Aniv'o on an iMac running Mojave version 10.14.5 but I installed Anvi'o using Docker. Below is the output of anvi-self-test --version.
```
Anvi'o version ..................…