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Hello,
Does the current PheWAS package support dosage input (instead of 0,1,2 genotypes)? If not, are you planning to include this in the future?
Currently, when I give dosage information as gen…
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Hi,
Thanks for the pipeline. I have been running it with the example parameters and it works well. However, I am not exactly sure how to run it with my own data.
I wondered if you could help me …
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Hello - I was wondering if there was code available for overlaid PheWAS plots of varying SNPs. For example, if my study includes ~100 SNPs and I ran individual PheWAS for each one, could I plot them a…
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Hi - I'm receiving an internal server error when trying to serve a pheweb page, but I cannot pin down the reason. Pheweb specifically breaks when trying to load phenotype pages and sometimes random pa…
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Hello - I am having trouble running the phewasMeta() function. I get the following error message:
Error in phewas_meta_logic(., fixed = fixed, ...) :
could not find function "phewas_meta_logic"…
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**Target Annotation**
The number of file with target annotation data is growing. We currently have the following files:
- cgi_biomarkers_per_variant.tsv
- chemicalprobes_portalprobes.tsv
- chemica…
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Go to this page:
https://www.targetvalidation.org/evidence/ENSG00000114013/EFO_0000540?view=sec:genetic_association
Link out from PheWAS evidence
https://europepmc.org/abstract/MED/1?fromSear…
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Great work and nice presentation in rstudio::conf!
I’m interested in running the app and wondering if you can add a mock input data for the preload data feature? Thanks.
Freeman
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Hi John -- I am not sure whether this is a `workflowr` question or a `rmarkdown` question. My sincere apology if it is just a `rmarkdown` question.
I am curious whether I can decide the URL for a *…
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I remember seeing that reported 19 datasources last week, matching what I see when I load the snapshot in a private installation. Now, however, I see the number 18 instead. Any idea what could have c…