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![samspace](https://user-images.githubusercontent.com/43663476/110859684-67df1f80-8281-11eb-95a5-d8607969c373.jpg)
* [Matt Daniels](https://twitter.com/mygunisquick)
* [Mike Elgan](https://twitter…
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related to: https://github.com/gustaveroussy/sopa/pull/26#issuecomment-1956543612
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Dear developer. I have issues with installing/importing package through pip. I created new conda env python 3.10 and did 'pip install sopa', it was installed, but when I try to proceed
import sopa.s…
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Hola como va? Queria consultar si la resolucion del siguiente ejercicio es correcta.
**Enunciado del ejercicio:**
Escribir una función palEnMat que reciba:
una matriz cuadrada de chars de dimens…
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I am getting in this error at patchify stage:
RuntimeError: The functions add_image(), add_labels(), add_points() and
add_shapes() have been removed in favor of dict-like access to the elements. …
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Hi, I am working my way through the Sopa Snakemake pipeline with one of our Merfish datasets.
A step that has been problematic is the `sopa explorer write`.
This takes a long time and the job wa…
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Hi SOPA team,
Thanks for this excellent work!
Would you help me to convert zarr format into xenium-like format using spatialdata_xenium_explorer.write function?
I have Nanostring Cosmx datas…
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https://mp.weixin.qq.com/s/LWiHO4hlzPi90Mg7tLrVZw
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### High priority
- [x] Add a WSI reader (read a wsi into Xarray and then transform to a SpatialData object)
- [x] Add whole tissue segmentation + conversion to a `shapely` polygon
- [x] Support m…
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CosMX images (and transcripts) have to be stitched before running sopa
EDIT: people from `spatialdata` are working on this