-
Hi,
First of all, great tool!
I'm trying to test ORFanage on my data, the example you provide works.
What I'm trying to do is the following, not sure if this is the correct use.
I have a c…
-
**Are you using the latest release?**
version used: Funannotate 1.8.15 (latest) via mamba
**Describe the bug**
funannotate predict did not incorporate UTR information from externally generated PA…
-
Hi, I'm getting a "skewer: command not found" error when I run the denovo assembly workflow.
I've already created a Docker image from the Dockerfile included with the repo and checked that skewer …
-
Hi! I arrived here via the preprint on bioRxiv and I think your pipeline looks very promising! I wanted to try it out with some data of mine, but I cannot find an explanation of the parameters for the…
-
Hello,
I have been able to run braker3 successfully, however, the braker3.gff3 output seems a bit off. There is not a single "gene" feature in the entire .gff3, I have checked the Augustus.hints.gt…
-
Hi there,
I am trying to run AHRD on my blastp data but all I get is results like this (file is 23,000 transcripts long)
Protein-Accession Blast-Hit-Accession AHRD-Quality-Code Human-Readable-Desc…
-
Hi all, I encountered problem with conda after I installed packages on centos
after executing
```conda install parallel-fastq-dump```，and installed
It is like this:
```
Traceback (most rece…
-
Hi EnTAP devs and users,
I just want to provide some feedback regarding the documentation of the tool and the configuration process as it stands for `EnTAP v0.10.8`.
**Documentation issues:**
…
-
I'm not sure if I'm doing the right thing when adding pasa_gff to my funannotate run.
When I run the predict command (as below), I get stuck in the `gff_to_gtf` function in `library.py`, which retu…
-
Hello dear I am run the transdecoder by those command
TransDecoder.LongOrfs -t '/home/fatemeh/trinity_outp/Trinity.fasta'
TransDecoder.Predict -t '/home/fatemeh/trinity_outp/Trinity.fasta'
but t…