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- [x] 12-ahrq-step-up-app-challenge.md
- [x] 36-iCARE-AD-ADRD.md
- [x] 46-nutrient-sensor-action-challenge-stage-ii.md
- [x] 48-nasa-vascular-tissue-challenge.md
- [x] 49-find-the-killer-frog-fung…
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https://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinder/data/2019-04-29.1/fam.tab
it would be very useful to add header line to this TSV file.
They are documented here
https://…
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Prokka returned some result of antimicrobial resistance genes, when i blast protein sequences to card, it returns different result to me, like geneA annotated as some type of ARG in prokka and geneB r…
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Using the function eucast_rules(), Stenotrophomonas maltophilia isolates should not be interpreted "R" to ceftazidime.
Indeed, it was updated in v3.1 of EUCAST Expert Rules ( http://www.eucast.org/…
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In individual blastn analysis for genes, I am getting 100% coverage and 98% identity for a gene OXA-51 in strains where abricate analysis summary was showing its absence. Kindly explain this discrepan…
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There are parts in annotating phenotypes that can be automated. Eg. Wherever there's an annotation -> find the term for the "relative to" annotation:
[1] "use a child of OMP:0007134 altered resista…
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Project: ENCODE
Illumina's high throughput sequencing instrument, the NovaSeq 6000 was released in 2017 and is most likely the successor of Illumina's HiSeq models. The NovaSeq leverages cost effe…
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We found the term meaning
"effector-triggered immunity /immune signalling "
GO:0009870 defense response signaling pathway, resistance gene-dependent
Rename
effector-triggered immune signaling …
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PAMP- triggered immunity (PTI) usually first line of defence
Upon association with PAMPs, the pattern-recognition receptors activate a downstream mitogen-activated protein kinase signaling cascade t…
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