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**Description**
While working through the tutorial, the following error is generated while trying to download and process a single sample from the SRA:
Species 'Staphylococcus' not available, plea…
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Hi, I recently started using Vienna and it works really well, except for YouTube feeds. As you can see the article/video is completely empty. Now I don't expect there to be an video, and I'm totally f…
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Rationale: currently characterization of environmental antimicrobial resistance genes is lacking as the potential bacterial pool is too large to sample. Using existing SRA data, if we find a homolog o…
bfjia updated
4 years ago
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I can install bactopia v1.4.9 using conda on OS X, but the `bactopia build --default` command fails with a 'ResolvePackageNotFound' error and a long list of missing packages. I think this is because t…
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**Submitting author:** @ramadatta (Prakki Sai Rama Sridatta)
**Repository:** https://github.com/ramadatta/CPgeneProfiler
**Version:** v2.1.0
**Editor:** @will-rowe
**Reviewers:** @fmaguire, @boasvdp
…
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**Submitting author:** @ramadatta (Prakki Sai Rama Sridatta)
**Repository:** https://github.com/ramadatta/CPgeneProfiler
**Version:** v2.1.1
**Editor:** @will-rowe
**Reviewer:** @fmaguire, @boasvdp
**…
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We’d like to request a PURL and prefix in OBO for the Virulence Ontology (VIRO) we developed. Here is the information:
**Ontology title:** Virulence Ontology
**Requested prefix:** VIRO
**Downloa…
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We'd like to request a PURL and prefix in OBO for the Mobilome Ontology (MOBIO) we developed. Here is the information:
**Ontology title:** Mobilome Ontology
**Requested prefix:** MOBIO
**Downloa…
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Seems like the NCBI AMRfinder paper was published in [Antimicrobial Agents and Chemotherapy](https://pubmed.ncbi.nlm.nih.gov/31427293-validating-the-amrfinder-tool-and-resistance-gene-database-by-usin…
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Hi,
I have problems getting bactopia to run and it seems that it's an installation issue?! I have more than 10GB free space in my home folder and am wondering whether this is not enough?
Thanks in a…