-
https://mp.weixin.qq.com/s/M8q1WZ8dgcWYwVWcT-iYAA
ixxmu updated
2 weeks ago
-
Hi. I'm trying to integrate scRNA and ATAC data and failing on the addGeneIntegrationMatrix() step with both my own data and the tutorial data. ArchR has been updated to the most current version and I…
-
Hello,
I have multiple ArchRProject objects to be combined/merged. These ArchR objects were generated from different batches of arrow files/experiments, however, I don't need to do "integration" su…
-
Hello,
I am trying to look at enrichment of overlap between SNPs and accessible peaks in my clusters/cell types. How can I extract my accessible peaks on a per cluster basis, so that I can look at…
-
I am trying to record a program's execution using rr and it looks like rr is encountering a segmentation fault. The command to record execution is something like `rr record -n `. Aside from `rr: Savi…
-
**Describe the bug**
When I used subsetArchRProject to create new arrow files, a bug arose as in the KI.txt.
```
Copying Arrow Files...
Error in .safelapply(seq_along(inArrows), function(x) { :
E…
-
Hello,
I am using this following command to transform a seurat obeject but I got an error how can I manage it ? AttributeError?
co.data_conversion.seurat_object_to_anndata("/Users/alegac/Deskto…
-
Installing harmony in R (4.0.0 on MacOS) directly from Github is giving an error message :-
```
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-harmony/00new/ha…
-
### Discussed in https://github.com/aertslab/scenicplus/discussions/371
Originally posted by **AthanasiaSt** April 25, 2024
Hello,
Thank you for the development of scenicplus and it's helpf…
-
When I tried to plot the density distribution of motif deviation score by myself, I exacted the score as following.
`score