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immunogenomics
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harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
https://portals.broadinstitute.org/harmony/
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Updated DESCRIPTION and minor documentation updates
#257
pati-ni
opened
13 hours ago
0
The error of harmony after subsetting data
#256
Carrey14
opened
6 days ago
0
argument 3 matches multiple formal arguments
#255
Guliariel
opened
1 week ago
1
how to use harmony for Seurat Spatial Data?
#254
flpxn7
opened
1 month ago
0
argument 3 matches multiple formal arguments
#253
jasoncrucify
opened
1 month ago
0
Gene-level Correction
#252
DarioS
opened
1 month ago
0
advice about parameters for integration
#251
javiers1983
opened
3 months ago
0
Harmony using a predefined clustering vector
#250
tkcaccia
closed
4 months ago
5
"Is It Feasible to Use Harmony Directly for Batch Correction in Seurat V5 Instead of “ IntegrateLayers“?"
#249
Tylesteven
opened
4 months ago
5
Trying to load pbmc.RData from Zenodo
#248
davetang
opened
4 months ago
2
Can i obtain my original data shape?
#247
leeleavitt
opened
5 months ago
3
Is it okay to paste two covariates into one when correcting for two covariates?
#246
YiweiNiu
closed
4 months ago
4
Reordering PCs?
#245
yesitsjess
closed
4 months ago
1
Integration of scATACseq datasets
#244
pobmmu
closed
6 months ago
1
Cannot reproduce Seurat.ipynb vignette; parameters not passed
#243
Nichal123
opened
6 months ago
3
vars_use Definition Not Explicit
#242
DarioS
opened
6 months ago
0
Convergence plot showing bizarre reading, data okay to use?
#241
jcshuy
opened
6 months ago
2
No Instructions for Tissues and Cell Culture Merging
#240
DarioS
closed
6 months ago
6
Plotting Function do_scatter Does Not Exist
#239
DarioS
opened
6 months ago
1
feature.loadings of harmony is missing in SummarizedExperiment
#238
xiangpin
opened
7 months ago
0
Error: matrix multiplication: incompatible matrix dimensions: 100x96490 and 96489x22
#237
claireanjou
opened
7 months ago
1
Differential expression and volcano
#236
antoine4ucsd
closed
7 months ago
4
How do I download version 0.99.9 of harmony?
#235
Yuan-9
closed
7 months ago
20
Fix link in DESCRIPTION + add gh link
#234
olivroy
opened
7 months ago
0
Merging or Combining multiple ArchRProject Objects
#233
qdong2023
closed
8 months ago
1
Lambda selection
#232
erflynn
closed
7 months ago
6
error when integrate multiple layers' batches
#231
hanst716
closed
8 months ago
1
Integration of patient-matched tumor and normal tissue samples
#230
samgest
closed
8 months ago
3
How to combine/merge three ArchRProject objects
#229
qdong2023
closed
8 months ago
2
Error in harmony
#228
ydai3
closed
8 months ago
3
Error in RunHarmony: argument 3 matches multiple formal arguments
#227
katimbach
closed
8 months ago
2
Installation issues
#226
ayyildizd
closed
8 months ago
2
harmony performance eval
#225
antoine4ucsd
closed
8 months ago
4
harmony for normalized scRNA-seq dataset
#224
martina811
closed
8 months ago
1
mutiple covariates - error number of lambdas specified
#223
antoine4ucsd
closed
9 months ago
2
question regarding harmony elbow plot and PCs selection
#222
iichelhadi
closed
9 months ago
5
Harmony converged after 6 iterations Error in UseMethod(generic = "Key", object = object) : no applicable method for 'Key'...
#221
ncedi12
opened
9 months ago
3
Parameters for integrating different species
#220
DiracZhu1998
closed
9 months ago
5
RunHarmony on the weights branch errors with incompatible matrix dimensions
#219
deevdevil88
opened
9 months ago
16
Harmony v1.2
#218
pati-ni
closed
9 months ago
0
installation issues
#217
vappiah
opened
9 months ago
3
Batch effect seen on Heatmap
#216
Lucas-Maciel
opened
10 months ago
5
harmony::RunHarmony v1.1.0 ignoring parameters
#215
jcshuy
closed
10 months ago
1
Simple harmony call fails on v1.1.0
#214
const-ae
closed
9 months ago
5
Installation issue MacOS Monterey
#213
SalimMegat
closed
7 months ago
8
Harmony v 1.1
#212
pati-ni
closed
10 months ago
0
New version does not respect `verbose = FALSE`
#211
const-ae
closed
9 months ago
2
conda install -c bioconda r-harmony failed
#210
hanguojun007
opened
10 months ago
1
Prepare for upcoming Seurat v5 release
#209
saketkc
closed
10 months ago
1
Doc and readme fixes
#208
pati-ni
closed
11 months ago
0
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