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*This issue is a work in progress - feel free to comment and if something is confusing please say so, but I will be fleshing this out more in the next few weeks!*
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An interes…
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Hi there,
I am attempting your pipeline with single end reads (since my overlap is over 65bp and I get an error from flash when trying to merge. Is there any way to adjust flash params?). Reads wer…
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Unfortunately, I am trying to analyse a GeCKO result without any biological replicates. The analysis is quitting as edgeR has a strict 2 biological replicate requirement. Is there a way to switch off …
deb-m updated
6 years ago
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Hi I am using crispr guided to a target region. we then sequenced the genomic dna (pcr product) that targets this region using miseq 2x250 + 10bp Index1 + 8bp Index2 (as defined in my previous questio…
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Hi,
First I would like to thank developer group for coming up with a convenient and easily usable tool. I would like to ask a question rather than a issue regarding the software.
**Background:**…
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I tried several times running my already split paired-end reads with CRISPResso, unfortunately this is the result I get every time.
[Command used]:
CRISPResso /Users/mtoetzl/anaconda/bin/CRISPR…
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This is marked as a **good first bug** because, although it sounds complicated, it's computationally not as bad as it sounds - I think. There might be some tricky sections, but if a newcomer is attemp…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/WubingZhang/MAGeCKFlute
Confirm the following by …
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"CRISPR repeats range in size from 24 to 48 base pairs.[56]" (https://en.wikipedia.org/wiki/CRISPR).
"Analysis of the current CRISPR database24 reveals that repeats range from 23- to 50-nt long and h…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/valenlab/amplican
Confirm the following by editing each…