lucapinello CRISPResso issues

lucapinello / CRISPResso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

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issues

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Alignment error, please check your input

#55 StevenVB12 closed 5 years ago
0
Fix colors of bases in allele plot

#54 rakarnik closed 5 years ago
0
Longer Allele Sequences

#53 amarcog closed 5 years ago
4
CRISPResso command failed (return value 127) on region #0:

#52 pankajki closed 5 years ago
1
Last stage error Error with FLASH for CRISPRessoPooled.py

#51 bilalSarwar2020 closed 5 years ago
5
Appears to be counting reads with deletions as unedited

#50 AGRaeside closed 5 years ago
1
ERROR: Flash failed to run, please check the log file.

#49 madeleinesitton closed 5 years ago
1
Left-aligning option

#48 dfajar2 closed 5 years ago
7
modify the python scripts for availability to other CRISPR systems

#47 tiramisutes closed 5 years ago
1
ERROR: The amplicons should be all distinct!

#46 tiramisutes closed 6 years ago
1
[FLASH] ERROR: Maximum overlap (-173) cannot be less than the minimum overlap (4).

#45 hffqyd closed 6 years ago
1
Error while generating plots with Cpf1 data

#44 dfajar2 closed 6 years ago
4
fixed indent

#43 kclem closed 6 years ago
0
Added --max_paired_end_reads_overlap parameter for FLASH

#42 kclem closed 6 years ago
0
Run for a long times

#41 tiramisutes closed 6 years ago
3
Bug fixes and debug functionality - upgrade to 1.0.11

#40 kclem closed 6 years ago
0
free variable 'df_genes' referenced before assignment in enclosing scope", u'occurred at index Site1'

#39 tiramisutes closed 6 years ago
7
CRIPRessoPooled - query

#38 frankbioinfo closed 5 years ago
1
FLASH: Low Percent Combined

#37 Transmystical closed 6 years ago
2
Use --min_identity_score for read vs amplicon

#36 rakarnik closed 6 years ago
3
Front End Code

#35 ksindy closed 6 years ago
4
Error "'numpy.int64'

#34 amarcog closed 6 years ago
7
Unexpected error: invalid literal for int() with base 10: '0rc1'

#33 strohmjeff closed 6 years ago
10
Bug in reporting Quantification_of_editing_frequency.txt when np.sum produces nan.

#32 kclem closed 6 years ago
1
CRISPRessoPool update and debug features

#31 kclem closed 6 years ago
0
mutation frequency plot

#30 frankbioinfo closed 6 years ago
1
ERROR: If using all scalar values, you must pass an index

#29 strohmjeff closed 6 years ago
3
crispressoweb dockerfile

#28 chriscatalyticds closed 6 years ago
1
Different results from online and command line CRISPResso with same data and parameters

#27 miikaelf closed 6 years ago
5
No reads aligned?

#26 milw closed 6 years ago
4
Make installing of external dependencies optional

#25 jrderuiter closed 6 years ago
2
Error with FLASH for CRISPResso

#24 mtoetzl closed 6 years ago
13
no of reads from pie chart and alleles do not add up

#23 frankbioinfo closed 6 years ago
2
Running CRISPResso - query

#22 frankbioinfo closed 6 years ago
1
If guide seq is wrong, do not crash instead run without guide seq

#21 Imoteph closed 6 years ago
3
Trimming adapter sequences that are not Nextera

#20 nanez20 closed 6 years ago
1
Issue with ONLY AMPLICONS running mode

#19 amarcog closed 7 years ago
6
Python error running locally

#18 danielnavarrogomez closed 7 years ago
2
Trailing whitespace in the amplicon sequence is not tolerated

#17 martinaryee opened 7 years ago
0
Specify the FLASH --max-overlap parameter?

#16 martinaryee closed 7 years ago
4
Window around cleavage position seems to be asymmetrical

#15 mdyckmanns closed 7 years ago
7
Correct path in docker hub and pull

#14 richstoner closed 7 years ago
1
RuntimeWarning: invalid value encountered in divide

#13 mmcneill123 closed 7 years ago
6
Amplicon Sequence

#12 steve-shan closed 7 years ago
14
Flash failed to run flash

#11 steve-shan closed 7 years ago
1
Readme fixes

#10 ppcherng closed 7 years ago
1
CRISPResso available on bioconda

#9 tomkinsc closed 7 years ago
1
Tests

#8 magniff closed 7 years ago
4
Error with Flash

#7 murphycj closed 7 years ago
2
ERROR: 'transform' must be an instance of 'matplotlib.transform.Transform'

#6 MLKaufman closed 7 years ago
9