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Hello @troels @pmarks @mxposed @zeehio @smoe
Does Seurat have any option/function to generate enrichment spatial plots and UMAPs for Visium data?
Similar to those generated by another pipeline fo…
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Building with pypi tarball fails with:
```
sudo port -vs install py311-spopt
---> Computing dependencies for py311-spopt.
---> Fetching distfiles for py311-spopt
---> Verifying checksums for…
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Hello everyone,
While generating visium object in Giotto in R studio, I get an error:
instrs = createGiottoInstructions( python_path = 'C:/Users/AppData/Local/r-miniconda/envs/giotto_env/python.…
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Please briefly describe your problem and what output you expect. If you have a question, please don't use this form.
Instead, ask on our [Community Forum](https://github.com/icbi-lab/immunedeconv/dis…
shrvi updated
7 months ago
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SpaceDeconv will provide a unified interface to methods for deconvolution spatial transcriptomics (ST) data:
1. 1st-generation method (human and mouse) available through *immunedeconv*;
2. 2nd-gener…
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**Describe the Error**
Heatmap functions produce thumbnail image instead of normal size. I am having the issue with `cellProximityHeatmap`, but in fact it seems to be a problem with several heatmap…
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**Submitting author:** @DavidLapous (David Loiseaux)
**Repository:** https://github.com/DavidLapous/multipers
**Branch with paper.md** (empty if default branch):
**Version:** v2.0.0
**Editor:** @RMel…
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Today I was appliying the last changes, which included a massive trim() on annotations on the MB server [http://tickets.musicbrainz.org/browse/MBS-2836], and it seems there is an error generating the …
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Hi,
Thanks for developing this great tool! I was curious to know if you had any insights or suggestions on the most effective way to run BayesSpace on a fully processed Seurat object containing dat…
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TSF functionality should be implemented using FEDOT as a core.
The DL models for forecasting should be added as candidate operations.
They can be obtained from:
https://github.com/jdb78/pytorch…