-
I would prefer that the DGE matrix output in the last step by DigitalExpression returned a matrix of counts that used the ensembl gene/tx IDs or Entrez IDs (depending on where I sourced by gtf from). …
-
Hey
I am trying to run the whole pipeline for crop-seq, i am at the assign_gRNA_cells.py step and it is giving error.
File "assign_gRNA_cells.py", line 359, in
prj.add_sample_sheet()
Fil…
-
I think this is an error related to an amplicon with no coverage?
```
[32:04
-
Hi,
Is there a way to use the JACKS API to run the analysis starting from a log2 fold change table (and a corresponding table of precomputed variances)? That is, to input an sgRNA by screen table, …
-
I'd like to propose a glyph for type IIs restriction endonuclease sites, a feature used in diagrams of Golden Gate assembly and especially in MoClo-like hierarchical DNA assembly part/cassette/multige…
-
Many diagrams in practice include "interactions with interactions." This SEP establishes the circumstances in which such a form is allowed.
https://github.com/SynBioDex/SBOL-visual/blob/master/SEPs…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/loosolab/multicrispr
Confirm the following by edi…
-
If the rowData of the SummarizedExperiment does not contain a `gene` column, `gscreend::RunGscreend` fails with a non-helpful error message. Perhaps its possible to completely refrain from using such …
-
Currently Apollo supports most of the SO terms(https://github.com/The-Sequence-Ontology/SO-Ontologies) for annotation, it would be very useful to be able to have the full repertoire of SO terms for an…
-
```
sequenceConstraint(componentDefinition_subject,componentDefinition_object,restriction)
(
self._.componentDefinition_subject._c is a Component(componentDefinition_subject)
self._.componentDef…