issues
search
broadinstitute
/
Drop-seq
Java tools for analyzing Drop-seq data
MIT License
120
stars
34
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
no output
#484
akulan1
opened
1 week ago
12
Explicitly mark optional argument collections as optional
#483
kshakir
closed
2 weeks ago
1
unit test for column type conflict
#482
alecw
closed
3 weeks ago
0
Handle discordant column types due to some files having missing values
#481
alecw
closed
3 weeks ago
0
For optimus count the num_transcripts instead of using molecules
#480
kshakir
closed
3 weeks ago
0
Handling missing values in mapping file when creating metacells
#479
alecw
closed
4 weeks ago
1
Script to concatenate TSVs
#478
alecw
closed
1 month ago
1
Fix for donor assignment negative infinity likelihoods.
#477
jamesnemesh
closed
1 month ago
1
Fix MANIFEST doc
#476
alecw
closed
1 month ago
1
Sync environment.yml and pyproject.toml
#475
kshakir
closed
1 month ago
0
eliminate subparser in dropseq_aggregation clp
#474
alecw
closed
1 month ago
0
rename package
#473
alecw
closed
1 month ago
0
Handle booleans
#472
alecw
closed
1 month ago
0
Require unique values for join column in secondary file to be joined
#471
alecw
closed
1 month ago
0
Script to join and filter metadata TSVs
#470
alecw
closed
1 month ago
0
Move python package so that repo can support multiple python packages
#469
alecw
closed
1 month ago
0
Fix to donor assignment plotting when there's only a single donor detected.
#468
jamesnemesh
closed
1 month ago
0
Questions on knee plot analysis and matrix construction
#467
bulahwu
opened
1 month ago
2
Add ability to get CBCs from a possibly multi-column file with a header
#466
alecw
closed
1 month ago
1
Round optimus_h5ad_to_dropseq pct metrics
#465
kshakir
closed
1 month ago
0
New program MakeMetacellsFromTripletDge
#464
alecw
closed
1 month ago
1
New program MakeTripletDge
#463
alecw
closed
1 month ago
1
Enable faster h5ad to mtx in renamed optimus_h5ad_to_dropseq
#462
kshakir
closed
1 month ago
0
Enable tools such as FilterBamByTag to read large files from gs://
#461
kshakir
closed
1 month ago
2
Add intronic to Optimus genic metrics
#460
kshakir
closed
1 month ago
0
Add % to doublet rate in plot title
#459
alecw
closed
1 month ago
0
roxygen change propagated to Rd file
#458
alecw
closed
1 month ago
0
Remove dev branch from GHA builds.
#457
kshakir
closed
1 month ago
0
Modified donor assignment analysis to generate single page tear sheet
#456
alecw
closed
1 month ago
0
Update conda configurations
#455
kshakir
closed
1 month ago
0
Detect empty DGE
#454
alecw
closed
2 months ago
1
Include antisense counts and output barcodes during optimus_h5ad_to_dge
#453
kshakir
closed
2 months ago
0
Try to re-enable codecov
#452
alecw
closed
2 months ago
0
script bug fixes
#451
alecw
closed
2 months ago
0
ERROR: Could not find one and only one picard.jar in deployment.
#450
gabriella-quinn
opened
2 months ago
1
CI for python packages
#449
alecw
closed
2 months ago
0
Create python-package-conda.yml
#448
alecw
closed
2 months ago
0
New script to convert optimus output into Drop-seq style files
#447
alecw
closed
2 months ago
0
Implement continuous integration for python code
#446
alecw
opened
2 months ago
0
Remove unreached code
#445
alecw
closed
2 months ago
0
package python code for hdf5 conversion
#444
alecw
closed
2 months ago
0
Move several Java programs to this repo
#443
alecw
closed
2 months ago
0
Utility method to validate that VCF contains desired samples
#442
alecw
closed
3 months ago
0
DonorAssignmentQC not emitting plotCommonDonorsFdrDistribution result
#441
jamesnemesh
opened
3 months ago
0
Small update to donor assignment to expose the dataframe / classifica…
#440
jamesnemesh
closed
3 months ago
0
A Feature to use gene ID instead of gene names
#439
WellSIM
opened
3 months ago
1
Update ROxygen version
#438
jamesnemesh
closed
3 months ago
0
update files generated by Roxygen
#437
alecw
closed
4 months ago
0
Handle read_dge_gz case where DGE donors names are numeric
#436
kshakir
closed
4 months ago
1
update to donor assignment standard analysis with new plot
#435
jamesnemesh
closed
4 months ago
0
Next