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Hello,
While updating the hh-suite package for Debian I noticed that we weren't doing full testing as data/test.sh references the MPI builds and we don't make them as MPI is site-specific.
I rem…
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Hello :)
This might be quite a stupid problem as i'm new to coding. Yesterday, i managed to get the hhsearch command to work using the code you provided on the wiki page
-> hhsearch -i data/que…
SLS79 updated
4 years ago
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Hi,
I want to make a custom HHsuite database from a set of protein family multiple sequence-alignments I have. I was wondering how to do that in version 3 as I did not see this mentioned in the [us…
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:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki).
## Expected Behavior
Compilation of hh-suite 3.2.0 with MPI successful.
## Current Behavior
E…
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Hi,
Is it possible to have the original contig name in the output include the information after the space so that the name of the contig from the original contig dictionary would be captured?
>KM_…
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we have an option to request `max_pvalue`, `max_evalue` and `min_prob`. It would be nice to also have an option to request minimum pair-wise sequence identity (`min_ident`) which can be directly read …
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## Expected Behavior
hhsearch -i input.hmm -d hmms.pal should work
## Current Behavior
ERROR: Could find neither hhm_db nor a3m_db!
## Steps to Reproduce (for bugs)
## Context
I am doing h…
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Two issues:
1. The trailing/beginning gaps can't be disabled. For clustering phage peptides, it is sometimes desirable to have no sequence shift in alignment and no gaps. With the options -x 0 -p -1…
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Hi,
I am using a strategy that I have been using for some time successfully but since the last update, it has stopped working.
The idea is to group the sequences and generate an MSA for each clu…
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From https://github.com/soedinglab/hh-suite/commit/c3567c8b8270ae89584f43d038b2bb40946002d7#commitcomment-25435936
> Can we please get an updated README?
>
>The current link to download pdb70 doe…