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mtisza1
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Cenote-Taker2
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
MIT License
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ERROR: Invalid inference value tRNAscan-SE
#49
MonicaSteffi
opened
1 year ago
1
Minimum protein length
#48
DarrenObbard
opened
1 year ago
2
ValueError: unsupported format character 'I' (0x49) at index 66
#47
Jeffery-Ni
opened
1 year ago
3
replace tbl2asn with table2asn
#46
mtisza1
opened
1 year ago
0
ResolvePackageNotFound: - bbtools=37.62
#45
jonye123
opened
1 year ago
1
DTR
#44
SergeyBaikal
closed
1 year ago
3
Updates
#43
SergeyBaikal
closed
1 year ago
3
cenote-taker2 vs (blastn nt & diamond nr)
#42
NailouZhang
opened
1 year ago
1
Quiet failure (strict mode option?)
#41
cmerenstein
closed
1 year ago
1
DTR removing
#40
ARastrojo
closed
1 year ago
1
BlastN "no high coverage hits
#39
NailouZhang
closed
1 year ago
3
erro:grep: sequin directory/*.fsa: No such file or directory when using latest cenote-Taker2.0.1
#38
xsq2022
closed
1 year ago
2
erro: Argument list too long when using latest cenote-Taker2.1.5
#37
hazel914
opened
1 year ago
2
How to include locus_tag or gene_id in gbf?
#36
k6logc
opened
1 year ago
2
input reads (=megahit output) of cenote
#35
cn6659
closed
1 year ago
1
Error in script for VcontACT?
#34
geboro
closed
1 year ago
1
Pipeline hangs at PHANOTATE step
#33
cmerenstein
closed
1 year ago
6
Contigs in the CONTIG_SUMMARY.tsv have neither ".rotate.fasta" nor ".tax_guide.blastx.out"
#32
cn6659
closed
1 year ago
1
Catalog content no_end_contigs_with_viral_domain
#31
SergeyBaikal
closed
2 years ago
2
Getting phage contigs even after "phage pruning" is set to true
#30
eul2021
closed
2 years ago
3
"-am True" edits the sequence
#29
DarrenObbard
closed
2 years ago
4
None of my viral contigs are getting functional annotations
#28
jamesck2
closed
1 year ago
1
Unable to reproduce results of your test contigs example
#27
eul2021
closed
1 year ago
1
ITR length and running irf
#26
eul2021
closed
1 year ago
3
ModuleNotFoundError: No module named 'fastpathz'
#25
JSSaini
closed
1 year ago
2
Databases
#24
SergeyBaikal
closed
1 year ago
4
conda install of bowtie fails?
#23
DarrenObbard
closed
1 year ago
1
BlastN "no high coverage hits"
#22
M-K1
closed
1 year ago
2
Argument list too long
#21
xuechunxu
closed
1 year ago
3
Rotation to avoid ORFs overlapping with breakpoint does not seem to work?
#20
ldj248
closed
1 year ago
3
Taxonomic rank information of blastx.out
#19
neptuneyt
closed
1 year ago
2
API key of NCBI
#18
neptuneyt
closed
1 year ago
4
No taxonomic assignment rank infomation
#17
neptuneyt
closed
1 year ago
0
About output files
#16
xxxkkkmmm
closed
2 years ago
2
Circularity detection and BlastN
#15
KailunZM
closed
2 years ago
8
Run time with 7,000 viral genomes
#14
cerebis
closed
2 years ago
2
Core dump
#13
KailunZM
closed
2 years ago
5
Unexpected sensitivity to . characters in output name
#12
DarrenObbard
closed
2 years ago
3
Feature request: blastn could use multiple threads
#11
DarrenObbard
closed
2 years ago
2
Find taxonomy via best ORF
#10
Roli-Wilhelm
closed
2 years ago
8
find : Argument list too long
#9
DarrenObbard
closed
2 years ago
7
Minor issue on a source modifier
#8
cesimsek
closed
3 years ago
2
Clarification about how CT2 version 2.0.1 identifies a contig as a "Conjugative Transposon" in the *.tsv file?
#7
RachelRodgers
closed
2 years ago
12
Hangs with no feedback
#6
DarrenObbard
closed
2 years ago
11
any option to use continue mode
#5
Thexiyang
closed
2 years ago
4
download-db.sh
#4
Thexiyang
closed
3 years ago
3
Only detecting 3 test viruses, and no genbank output
#3
pck0
closed
3 years ago
4
Linking rna_virus search to original contig
#2
mihinduk
closed
4 years ago
8
Ancillary files not found when trying to remove
#1
npavlovikj
opened
4 years ago
6