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Our current workflow and scripts support the idea of splitting data by chromosome, which is intended to:
- make memory consumption more manageable
- support parallel processing
- make results sma…
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Problem under discussion:
- We want to support multiple hash functions in khmer.
- Some uses of the hash function require reversibility, others do not:
- Partitioning requires exact storage of some k-…
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This list is a bit old and not all entries may make sense. Moved over from https://github.com/dib-lab/khmer/issues/321
- [ ] add a subtitle
- [ ] document our documentation conventions
- [ ] buildi…
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Hello,
I am using the current linux-amd64.
Canu keeps failing at the filterCorrectionOverlaps with no error output. Or it just stops...
I have a large memory box of 2TB.
commands I have tire…
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Supporting k values > 32 has been on the table for a while (since #27 and #60 in 2013). Some progress was made on this with #624, but this PR has stalled.
I'd like to suggest that we prioritize this …
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Place for thoughts and progress on representing reversible hash values of (arbitrarily) large k-mers.
This is one of the things needed for #1441.
First idea from @camillescott is to switch from usin…
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I was trying to use clusterupdate to update a clustering (DB_trimmed_clu) build from DB_trimmed (a library of proteins) to DB_clusterupdate from a extended version of the library (DB_new) with 2 seque…
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Hi, the following is the log; re-run does not work and I do not know which file is broken. By the way, my canu 1.6 often got the same error.
```
/opt/gridengine/default/spool/compute-0-2/active_jo…
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Hi there,
I have recently encountered a segmentation fault error with metAMOS. I am using the latest version of the pipeline since last update but have come across the following problem at MAPREADS s…
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Hi Greg,
Sorry to bother you with this, but I'm trying to bisect a bug that coincides with my conversion to sparsepp. Strangely, I only see a bug when running on my Mac (i.e. never on a linux syst…
rob-p updated
7 years ago