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Hello everyone
I am trying to assemble 1.3Gb genome with 1.2% heterozygosity. I have done the hybrid assembly with masurca which resulted to overestimated assembly, the i ran redundans program which …
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Function cpuid in global-1/SOAPdenovo2/standardPregraph/hashFunction.c doesn't work on ARM64.
I checked MaSuRCA-3.4.3 and some features for ARM64 neon has been supported. I want to use MaSuRCA on ARM…
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Hi,
I am trying to assemble a bacterial genome from miseq paired end reads in masurca 3.3.0.
i compiled the configuration file as follows:
DATA
#Illumina paired end reads supplied as
#if…
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For Masurca assembly, in the SR_config file, the mean and standard deviation values are to be given based on the O/P of hte read_statistics. but, my .fq files gave the O/P as: mean - 150. SD- 0.
The …
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A separate config file needs to be prepared for each sample as per
https://github.com/alekseyzimin/masurca
This needs to be done inside the process itself. I am still trying to figure this part o…
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Hi,
I am trying to improve my denovo assembly with ntJoin v1.0.3. For the most part, it seems to be doing what I had hoped, but I some results that I do not understand.
I have 2 assemblies - 1 long…
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* Call an endpoint, maybe list_config that exposes clientgroups list
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I'm doing a couple assemblies using MaSuRCA-3.4.3. I'm also only using only trimmed illumina paired end reads (150 bp). The first assembly finished in about 34 hours and was ~95 Mbp. The second assemb…
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When I use checkHetsIndvVCF.sh, my plots look similar to the examples on this tutorial (https://speciationgenomics.github.io/allelicBalance/). The only major difference is that I have some background …
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Hi I am trying to look at best/cheapest options for underlying storage for MaSurca jobs.
Analyzing a run that is going on at the moment (in mr_pass2 stage) - I seem to conclude that high disk IOPS …