Gabaldonlab redundans issues

Gabaldonlab / redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

GNU General Public License v3.0

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issues

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Error in Platanus assembly?

#111 sanalbert opened 1 week ago
0
Which file is the final Homozygous chromosomes file?

#110 maruiqi0710 opened 2 weeks ago
0
Different outputs

#109 tamsinlh closed 7 months ago
2
Conda install issue

#108 ALongmuir12 closed 10 months ago
1
Gap closing error

#107 maxmaronna closed 10 months ago
2
fasta2homozygous.py make my contig file empty

#106 HouYan20 closed 10 months ago
2
TypeError: reduce() of empty iterable with no initial value

#105 ZhouTaoWang closed 9 months ago
7
Create docker-image.yml

#104 Dfupa closed 11 months ago
0
conda install error

#103 maxmaronna closed 12 months ago
6
Changes required for Bioconda recipe

#102 Dfupa closed 1 year ago
0
Question about scaffolding / gap closing

#101 SaelinB closed 1 year ago
5
GFAstats error

#100 aabaricalla closed 1 year ago
3
Docker/singularity container

#99 aabaricalla closed 1 year ago
2
Redundans v2.00 update

#98 Dfupa closed 1 year ago
0
SSPACE_Standard_v3.0.pl run failed with Can't open bwa output -- fatal

#97 NailouZhang closed 1 year ago
2
redundant running too long time

#96 zhang144999 closed 1 year ago
3
OSError: [Errno 8] Exec format error

#95 BioHlT closed 1 year ago
3
Gapcloser step no multithread

#94 aabaricalla closed 2 years ago
2
How to use redundans in any path

#93 HuangseYuanli closed 2 years ago
0
Where is the `fasta2diverged.py` script?

#92 MatteoSchiavinato closed 2 years ago
1
[ERROR] Empty FastA file encountered:

#91 mgarl-10 closed 1 year ago
2
Increase the usage of combined assignment operators

#90 elfring closed 1 year ago
1
Problem on performance

#89 Hai1983 closed 2 years ago
1
RuntimeError: maximum recursion depth exceeded

#88 JonEilers closed 1 year ago
1
scaffolding options

#87 bishopia closed 2 years ago
1
Confusing or misleading run text

#86 pdimens closed 2 years ago
1
Change of tmp default folder

#85 marco91sol closed 2 years ago
1
Assembly correction

#84 mamtamasand closed 3 years ago
2
why -i fq is required？

#83 rainjy closed 3 years ago
1
Redundans frozen in final reduction step for 9 days with no more output

#82 stupornova33 closed 4 years ago
4
reduction step overlap

#81 LucieGL closed 4 years ago
1
--log file empty, get statistics?

#80 matryoskina closed 4 years ago
1
Redundans only uses 1 CPU for lastal, even when setting 32 threads

#79 charlesfeigin closed 4 years ago
0
Redundans won't start

#78 jahneldardavik closed 4 years ago
1
OSError: [Errno 8] Exec format error

#77 emmannaemeka closed 4 years ago
1
OSError: [Errno 20] Not a directory

#76 Kata-Pa closed 4 years ago
1
OSError: [Errno 17] File exists

#75 Kata-Pa closed 4 years ago
1
ImportError After Launching

#74 floutt closed 4 years ago
1
Scaffolding with long reads fails

#73 hkrzystek closed 4 years ago
2
Is it possible to get a gfa

#72 ghost closed 2 years ago
1
v0.13 version download

#71 forrwill closed 4 years ago
2
IOError: [Errno 28] No space left on device

#70 AMMMachado closed 5 years ago
0
IOError: [Errno 28] No space left on device

#69 AMMMachado closed 4 years ago
2
Install tmpfile

#68 waoki closed 2 years ago
1
Securely pre-create log file, and honor $TMPDIR

#67 waoki closed 5 years ago
0
INSTALL.sh uses but doesn't set $log

#66 waoki closed 5 years ago
1
bin/.compile.sh susceptible to symlink attack

#65 waoki closed 5 years ago
1
Redundans seems to not be reading input Fasta properly

#64 DaniPaulo closed 5 years ago
1
[WARNING] Nothing reduced, but why? Redundans seems to not process the entire fasta file.

#63 DaniPaulo closed 5 years ago
1
Reduction step "reduces" 90% of the assembly

#62 SvitlanaLukicheva closed 2 years ago
8