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I tried to load one of my feature groups and got the following error
VM43:452 Mixed Content: The page at 'https://www.alpha.patricbrc.org/' was loaded over HTTPS, but requested an insecure image 'h…
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Using ncbi-genome-download 0.2.7 from bioconda in a python 2.7 Anaconda env:
Error does not occur when `-m` is left out
```
$ ncbi-genome-download -m ncbi-metadata.tsv -s refseq -F genbank -l compl…
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This is an easy one. In Similar Genome Finder, Phylogenetic Tree, and Proteome Comparison Services, the example genome name in the Select Genome input box is "M. tuberculosis CDC1551." However, if y…
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Example:
```
ncbi = NCBITaxa()
descendants = ncbi.get_descendant_taxa(1763) # taxid of Mycobacterium
```
77643, taxid for Mycobacterium tuberculosis complex (species group) is not in descenda…
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The gmt folder of downloads only contains gmt files for 17 of the 25 species in the Analysis Collection. Missing species:
Solanum lycopersicum
Hordeum vulgare
Zea mays
Gibberella Zeae
Bacillus …
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If I click on this thing on the home page:
![image](https://cloud.githubusercontent.com/assets/7661533/19773571/b235f92e-9c2f-11e6-9bf8-75b396c02045.png)
It puts me on a "Feature View" page for Myco…
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Hi Hajk-Georg
I am trying to retrieve various reference genomes of viruses held in Genbank, or more specifically NCBI's RefSeq database.
whilst biomartr 0.7.0 seems to work well for most taxons…
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[this ticket may be moved to a different repo. A lot of the functionality is the same as geferencer so putting here for now]
given a list of taxa (species and intermediate nodes), pre-generate a ta…
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Fatal error: Exit code 1 ()
2018-04-30 17:39:08,306 DEBUG: Namespace(files=[], force=False, input_directory=None, input_fasta_genome_name=None, json=False, keep_tmp=False, low_cov_depth_freq=20, low_…
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Hi,
I tried linking the GO with Reactome thanks to DBXref properties in go.owl and I observed that the ids of Reactome are the old versions and some of them don't exist.
Regards