kblin ncbi-genome-download issues

kblin / ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

Apache License 2.0

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issues

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ncbi-genome-download works with refseq for me, but not genbank

#234 Laura-Alex opened 1 week ago
0
file type requested not found in NCBI

#232 mvalvano opened 3 months ago
0
Using ncbi-genome-download package

#231 ChillarAnand closed 3 months ago
4
Download genomes from assembly file

#229 ChillarAnand closed 3 months ago
1
Recent issue downloading from GenBank but not RefSeq

#228 raufs closed 4 months ago
1
Update issue templates

#227 kblin closed 4 months ago
0
issue with ncbi-genome-download

#226 SrichandanPadhi closed 4 months ago
1
KeyError: 'assembly_accession'

#225 biotemon closed 5 months ago
1
Failing during checking assembly?

#224 Thomieh73 opened 5 months ago
1
Host Link Could be Incorrect

#223 Mohammed-Quraishi opened 8 months ago
2
ncbi-genome-download shows error "Unsupported group"

#222 Anju-h closed 8 months ago
4
can it download genomes of specific strains?

#220 Liao-PRIC closed 11 months ago
1
No downloads matched error

#219 tasha99 closed 4 months ago
2
Download only representative assembly version using ncbi-genome-download

#217 KinSimon96 closed 1 year ago
0
/path error when running ncbi-genome-download in a shell script

#216 KinSimon96 opened 1 year ago
1
gimme_taxa.py / ngd mismatched format

#215 zreitz opened 1 year ago
2
Collect author info from other ncbi-genome-download contributors.

#214 kblin opened 1 year ago
0
Update summary.py

#211 twelvesummer closed 1 year ago
1
Allow for fuzzy match of assembly summary header

#210 chasemc closed 1 year ago
9
KeyError: 'assembly_accession'

#209 scorreard closed 1 year ago
17
Support for filtering assemblies by sequencing platform?

#208 JonathanAbrahams1337 closed 1 year ago
3
How can I reference ncbi-genome-download

#207 padpadpadpad closed 1 year ago
11
Can't download unclassified organisms

#206 MatthieuBoulinguiez opened 1 year ago
0
Number of genomes downloaded not corresponding to number of entries

#205 arfaiq opened 1 year ago
1
Check if accessions has CDS?

#203 ElinorSterner opened 1 year ago
1
Option for metadata file only

#202 Ahmed-Shibl opened 1 year ago
1
Update config.py

#201 SwiftSeal closed 1 year ago
2
Download hangs with no output when given long .txt file

#200 Tylersuard closed 1 year ago
0
Feature request: filter by length of sequence

#199 Tylersuard opened 1 year ago
0
Databases version

#197 SergeyBaikal opened 2 years ago
0
Missing genomes when downloading with genura

#196 WEIGUO93 opened 2 years ago
0
.I use commond line" ncbi-genome-download --formats fasta viral" to load refseq virus,it is 1847 complete squeuces in total,is it right?

#195 qinjunjun opened 2 years ago
3
Error while downloading genera

#194 sanyalab opened 2 years ago
0
Downloading of cDNA, GFF3, and EST sequences

#193 sanyalab opened 2 years ago
0
newB question - can I get the "reference" genome for a tax ID?

#192 RichardCorbett opened 2 years ago
0
Download problem

#191 XLOXL opened 2 years ago
2
Can the software specify the output file name

#180 Achuan-2 closed 2 years ago
0
perfect match option?

#179 RichardCorbett closed 2 years ago
3
All virus download errors

#178 xiaozhangzhang123 closed 2 years ago
1
Enhancements based on official API

#177 444thLiao closed 2 years ago
1
Add ngd to biocontainers?

#176 Midnighter closed 2 years ago
1
doanload failed when groups is set to all

#175 showteeth closed 2 years ago
5
ERROR: No downloads matched your filter. Please check your options.

#174 jolespin opened 3 years ago
1
Connection Error, RemoteDisconnected

#144 lisavader closed 2 years ago
18
Pseudogenes download

#143 gkoulouras opened 3 years ago
2
Filenames with genus, species and strain?

#142 johanneswerner opened 3 years ago
0
Reference sequence

#141 kate-simonova opened 3 years ago
0
problems downloading genome

#140 Timmywang1 opened 3 years ago
1
Some RefSeq genomes not being downloaded

#139 sskashaf opened 4 years ago
0
Not downloading suppressed or replaced Refseq assembly accessions

#138 BobFukkink opened 4 years ago
5