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I was looking at @mooreryan's unit test (#1264) and realized that the functional homogeneity index is a bit confused :) @mahmoudyousef98, the functional homogeneity should be `1.0` for all these cases…
meren updated
4 years ago
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```
Anvi'o version ...............................: esther (v6.2)
Profile DB version ...........................: 31
Contigs DB version ...........................: 14
Pan DB version .............…
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Hey guys,
I'm new to the community, so if I'm not following protocol with my posts, let me know! I noticed this issue today so I figured I would report it.
```
anvi-self-test -v
Anvi'o version …
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What I am missing in the whole review so far, is at least a brief section about meta data / annotation in pangenome graphs. If you want to build precise graphs, you need to make sure that people are a…
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```
Anvi'o version ...............................: esther (v6.1-master)
Profile DB version ...........................: 31
Contigs DB version ...........................: 14
Pan DB version ......…
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If no hits were found, then it should still be listed as a source, so that if the contigs database is used for pangenomics then the genomes storage would still be able to merge functional annotations …
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So far it looks to me like the only issue is the new HMMs, I relied on `Campbell_et_al` to test the phylogenomics workflow, and I need to switch to the new HMMs.
The issue is that in my mock datase…
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Hi ANVIO Team,
I m currently working my way though the anvio(5.5.0) pangenomics tutorial and I m acrossed two seperate issues:
1.) We dont know what exactly the issue is, its not listing the a…
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At https://registry.opendata.aws/hpgp-data/
and in the hpgp-data.yaml file at
https://github.com/awslabs/open-data-registry/tree/master/datasets
the AWS region for bucket=human-pangenomics is li…
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Hello,
I wonder where I can download the eleven human ONT data mentioned in your bioRxiv paper?
Could you provide related URL ?
Thanks !
Best