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Dear colleagues,
I'm impressed with your results described in the article.
I would really like to use your pipeline for our results obtained from Arabidopsis thaliana DNA ONT sequencing.
I’m tryin…
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Hi,
How do I go about using `signac` with custom genome, for which the EnsDb, and BSgenome is not yet available. Do I need to start with those two first?
Sameet
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In GO we have
GO:0017091 | AU-rich element binding
and
ARE binding | exact
An ARE binding motif has a very defined consensus (conserved from yeast to human), so maybe we should add that…
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- Repository: https://github.com/EricIto/BASiNET
Confirm the following by editing each check box to '[x]'
- [x] I understand that by submitting my package to _Bioconductor_,
the package sourc…
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While working on the transcription guidelines paper we have noticed some inconsistencies with the refactored transcription regulator definitions and subclasses.
@colinlog @RLovering and I have mad…
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**Hello Tim and team,**
**As always thanks for your excellent work. I am in the process of using Signac to analyze some scATAC data and found the ClosestFeature function gave the following error:**
…
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**Is your feature request related to a problem? Please describe.**
At the end of the pipeline it is always a great idea to visualise the results. Gigabytes of text data are OK for us to work with but…
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Dear developers of SPOT-RNA,
I am excited to run this SPOT-RNA tool. I found this error `tensorflow.Example exceeds maximum protobuf size of 2GB`. Is there a length limit for the input sequence? I …
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Dear Tim,
I have two scATAC-seq samples. I isolate 3 clusters from one sample(total 7 clusters), and then integrate it with another sample. I want to conduct footprint analysis. But I will get an e…
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### Setup
3.5.3 |Anaconda custom (x86_64)| (default, Mar 6 2017, 12:15:08)
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.57)]
CPython
Darwin-15.6.0-x86_64-i386-64bit
1.68
### Expected …