zavolanlab bindz-rbp issues

zavolanlab / bindz-rbp

RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.

https://github.com/zavolanlab/bindz-rbp

Apache License 2.0

6 stars 1 forks source link

issues

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ci: remove old travis config

#64 AngryMaciek closed 2 years ago
0
chore: bump up the version to 1.1.0

#63 AngryMaciek closed 2 years ago
1
refactor: minor changes for next release version

#62 AngryMaciek closed 2 years ago
0
refactor: correct column name

#61 AngryMaciek closed 2 years ago
0
LogLik_ratio_fg_bg

#60 AngryMaciek closed 2 years ago
0
refactor: adjust UI

#59 AngryMaciek closed 2 years ago
1
feat: add output file in BED format

#58 AngryMaciek closed 2 years ago
0
refactor: add onstart directive in Snakefile

#57 AngryMaciek closed 3 years ago
1
ci: move from Travis to GH Actions

#56 AngryMaciek closed 3 years ago
0
Refactor for ver 1.1.0

#55 AngryMaciek closed 2 years ago
3
docs: change tool name to bindz

#54 AngryMaciek closed 3 years ago
1
Project logo

#53 AngryMaciek opened 3 years ago
2
Simplify the UI

#52 AngryMaciek closed 2 years ago
2
Replace create outdir rule with onstart directive

#51 AngryMaciek closed 3 years ago
0
Improve pipeline output

#50 AngryMaciek closed 2 years ago
1
Move CI from Travis to GitHub Actions

#49 AngryMaciek closed 3 years ago
1
New name

#48 AngryMaciek closed 3 years ago
1
Update Readme with shields

#47 AngryMaciek closed 3 years ago
0
Turn off Travis pipeline test with singularity

#46 AngryMaciek closed 3 years ago
0
BindingScanner version 1.0.0

#45 AngryMaciek closed 3 years ago
0
docs: General Information update

#44 AngryMaciek closed 3 years ago
1
Include docs changes from Mihaela

#43 AngryMaciek closed 3 years ago
0
Prepare the repoistory for zenodo

#42 AngryMaciek closed 3 years ago
8
Unstable CI - bugfix

#41 AngryMaciek closed 4 years ago
2
Add CI tests on macOS

#40 AngryMaciek closed 4 years ago
0
Add pipeline testing with singularity

#39 krish8484 closed 4 years ago
5
Install singularity

#38 krish8484 closed 4 years ago
0
Add documentation for pipeline

#37 krish8484 closed 4 years ago
0
Paste motif name to left of sequence logo and increase width of graph

#36 krish8484 closed 4 years ago
7
Allow pwm motif files with . and fix logomaker issue

#35 krish8484 closed 4 years ago
1
Aesthetic modifications to the heatmap

#34 AngryMaciek closed 4 years ago
0
Logomaker Error while plotting some sequence logos

#33 AngryMaciek closed 4 years ago
0
Rule error while plotting seq.logos

#32 AngryMaciek closed 4 years ago
0
Fix sequence logo parallelization bug

#31 krish8484 closed 4 years ago
3
plot_sequence_logos incorrect parallelization

#30 AngryMaciek closed 4 years ago
0
add SLURM cluster execution

#29 AngryMaciek closed 4 years ago
0
Use pdf instead of svg

#28 krish8484 closed 4 years ago
0
Add sequence logos to heatmap

#27 krish8484 closed 4 years ago
17
Heatmap annotation with motif's sequence logos

#26 AngryMaciek closed 4 years ago
1
Plot sequence logos

#25 krish8484 closed 4 years ago
9
Non-reproducible md5 checksums of R plots

#24 AngryMaciek closed 3 years ago
2
Generating sequence logos for the input PWMs

#23 AngryMaciek closed 4 years ago
0
Add heatmap and heatmap script

#22 krish8484 closed 4 years ago
15
Sort tsv values according to binding-posterior

#21 krish8484 closed 4 years ago
0
Sort binding sites in the final table

#20 AngryMaciek closed 4 years ago
0
Integration test script path fix

#19 AngryMaciek closed 4 years ago
2
Extend pipeline to combine results in one tsv file

#18 krish8484 closed 4 years ago
9
Combine motif results

#17 krish8484 closed 4 years ago
4
Plot the binding sites for distinct motifs on the input RNA sequence

#16 AngryMaciek closed 4 years ago
4
Combine MotEvo results into one TSV file

#15 AngryMaciek closed 4 years ago
0