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There are a number of data files located in the RiboViz repository e.g. within:
* https://github.com/riboviz/RiboViz/tree/master/scripts
* https://github.com/riboviz/RiboViz/tree/master/vignette/i…
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Hello! I'm trying to draw RNA secondary structures using the `-t4`(RNApuzzle) or`-t3`(RNAturtle) options implemented in RNAfold and RNAplot. But the figures are not different from the ones when using …
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This SEP proposes a systematic set of "stem-top" glyphs representing small sites affecting DNA, RNA, or protein. The glyphs in this system are Biopolymer Location, Stability Element, and Cleavage Sit…
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The ontology files are out of date and need updating. We also need to have a README in the ontology directory that explains what all of the ontology files are for and what they mean.
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Hey, thanks for a nice package. I want to find the most structured region per transcript. So I want the raw positional entropy values as output, but I can't find a way to get them. Only as input for c…
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As a data wrangler I need to submit the Meyer dataset (https://github.com/HumanCellAtlas/hca-data-wrangling/issues/86) in prod, but given the issues that the spreadsheet caused, crashing both staging …
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- DNA topoisomerase IV complex
- A heteromeric enzyme, which in most bacteriophage species is composed of multiple subunits. Functions in chromosome segregation and can relax supercoiled DNA.
- Cell…
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### Proposed class:
DNA structure modifier
### Proposed text def:
"Through direct physical interaction, modifies the structure of a DNA molecule. This modification can be to the primary…
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GO:0005487 nucleocytoplasmic transporter activity
is a
"molecular carrier activity"
not "protein transporter activity"
see
https://github.com/geneontology/go-ontology/issues/14331
https…
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Hi,
rnaEval yields -0.8 for GCGAGAC&GUGCGGC and ((...((&))...))
But if I apply the rules of the turner library 2004 I get -1.2.
The difference stems from the symmetric 3x3 internal loop:
…